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Indiana University Bloomington

Clemmer Group

List of Publications



Links to PDF versions of publications are provided where possible and may be viewed with Adobe Acrobat Reader. Additionally, permalinks (and outside links for book chapters) are provided for publisher information. Important papers are highlighted in IU Leather. This list current as of 19 January 2023.




    Published:


    2022


  1. PATENT Clemmer, D. E.; El-Baba, T. J.; Fuller, D. R.; Woodall, D. W.; Russell, D. H.; Williams, E. R. Instrument and method for energizing molecules in charged droplets. US Patent Office. 2022. US11420205B2
  2. pub#272 permalink#272
  3. PATENT Clemmer, D. E.; Jarrold, M. F.; El-Baba, T. J.; Lutomski, C. A. Identification of sample subspecies based on particle mass and charge over a range of sample temperatures. US Patent Office. 2022. US20220216047A1
  4. pub#272 permalink#272
  5. Sarbu, M.; Fabris, D.; Vukelic, Z.; Clemmer, D. E.; Zamfir, A. D. Ion Mobility Mass Spectrometry Reveals Rare Sialylated Glycosphingolipid Structures in Human Cerebrospinal Fluid Molecules 2022 27, 3, 743. doi.org/10.3390/molecules27030743
  6. pub#272 permalink#272
  7. Walker, T. E.; Shirzadeh, M.; He Mirabel Sun; McCabe, J. W.; Roth, A.; Moghadamchargari, Z.; Clemmer, D. E.; Laganowsky, A.; Rye, H.; Russell, D. H. Temperature Regulates Stability, Ligand Binding (Mg2+ and ATP), and Stoichiometry of GroEL–GroES Complexes J. Am. Chem. Soc. 2022 144, 6, 2667–2678. doi.org/10.1021/jacs.1c11341
  8. pub#272 permalink#272
  9. Laganowsky, A.; Clemmer, D. E.; Russell, D. H. Variable-Temperature Native Mass Spectrometry for Studies of Protein Folding, Stabilities, Assembly, and Molecular Interactions Annual Reviews 2022 51, 63–77. doi.org/10.1146/annurev-biophys-102221-101121
  10. pub#272 permalink#272
  11. Sarbu, M.; Ica, R.; Sharon, E.; Clemmer, D. E.; Zamfir, A. D. Identification and Structural Characterization of Novel Chondroitin/Dermatan Sulfate Hexassacharide Domains in Human Decorin by Ion Mobility Tandem Mass Spectrometry Molecules 2022 27, 18, 6026. doi.org/10.3390/molecules27186026
  12. pub#272 permalink#272
  13. Zeng, X.; Novotny, M. V.; Clemmer, D. E.; Trinidad, J. C. A graphical representation of glycan heterogeneity Glycobiology 2022 32, 3, 201–207. doi.org/10.1093/glycob/cwab116
  14. pub#272 permalink#272
  15. Zhang, Z.; Conant, C. R.; El-Baba, T. J.; Raab, S. A.; Fuller, D. R.; Hales, D. A.; Clemmer, D. E. Diketopiperazine Formation from FPGnK (n = 1–9) Peptides: Rates of Structural Rearrangements and Mechanisms J. Phys. Chem. B. 2022 125, 29, 8107–8116. doi.org/10.1021/acs.jpcb.1c03515
  16. pub#272 permalink#272
  17. Zhang, Z.; Hales, D. A.; Clemmer, D. E. Influence of N Terminus Amino Acid on Peptide Cleavage in Solution through Diketopiperazine Formation J. Am. Soc. Mass. Spectrom. 2022 33, 88, 1368–1376. doi.org/10.1021/jasms.2c00037
  18. pub#272 permalink#272
  19. Brown, B. A.; Guda, P. R.; Zeng, X.; Anthony, A. J.; Couse, A. D.; Barnes, L.F.; Sharon, E. M.; Trinidad, J. C.; Sen, C. K.; Jarrold, M. F.; Ghatak, S.; Clemmer, D. E. Analysis of Keratinocytic Exosomes from Diabetic and Nondiabetic Mice by Charge Detection Mass Spectrometry Anal. Chem. 2022 94, 25, 8909–8918. doi.org/10.1021/acs.analchem.2c00453
  20. pub#272 permalink#272

    2021


  21. PATENT Clemmer, D. E.; Koeniger, S. L.; Valentine, J. S. Ion Mobility Spectrometer. EU Patent Specification. 2022. EP1952421B1
  22. pub#272 permalink#272
  23. Sarbu, M. D.; Vukelic, Z.; Clemmer, D. E.; Zamfir, A. D. Ion mobility mass spectrometry reveals novel and rare ganglioside structures in human cerebrospinal fluid. Febs. Open. Bio 2021 11, 212–212.
  24. Zamfir, A. D.; Sarbu, M.; Ica, R.; Clemmer, D. E.; Vkelic, Z. Brain glycomics by novel mass spectrometry approaches based on ion mobility and chipnanoelectrospray ionization. Febs. Open. Bio 2021 11, 67–67.
  25. Qiao, P.; Schrecke, S.; Walker, T.; McCabe, J. W.; Lyu, J.; Zhu, Y.; Zhang, T.; Kumar, S.; Clemmer, D. E.; Russell, D. H.; Laganowsky, A. Entropy in the Molecular Recognition of Membrane Protein–Lipid Interactions J. Phys. Chem. Lett. 2021 12, 51, 12218–12224. doi.org/10.1021/acs.jpclett.1c03750
  26. pub#272 permalink#272
  27. Raab, S. A.; El-Baba, T. J.; Laganowsky, A.; Russell, D. H.; Valentine, S. J.; Clemmer, D. E. Protons Are Fast and Smart; Proteins Are Slow and Dumb: On the Relationship of Electrospray Ionization Charge States and Conformations J. Am. Soc. Mass. Spectrom. 2021 32,7 1553–1561. doi.org/10.1021/jasms.1c00100
  28. pub#272 permalink#272
  29. El-Baba, T. J.; Raab, S. A.; Buckley, R. P.; Brown, C. J.; Lutomski, C. A.; Henderson, L. W.; Woodall, D. W.; Shen, J.; Trinidad, J. C.; Niu, H.; Jarrold, M. F.; Russell, D. H.; Laganowsky, A.; Clemmer, D. E. Thermal Analysis of a Mixture of Ribosomal Proteins by vT-ESI-MS: Toward a Parallel Approach for Characterizing the Stabilitome. Anal. Chem. 2021, 93, 8484–8492. doi.org/10.1021/acs.analchem.1c00772
  30. pub#272 permalink#272
  31. Russell, D. H.; Clemmer, D. E. Focus on Ionization Technologies Used in MS: Fundamentals and Applications, Honoring Dr. Sarah Trimpin, Recipient of the 2019 ASMS Biemann Medal. J. Am. Soc. Mass Spectrom. 2021, 32, 3, 616–617. doi.org/10.1021/jasms.1c00030
  32. pub#272 permalink#272
  33. Zhang, Z.; Raab, S. A.; Hales, D. H.; Clemmer, D. E. Influence of solvents upon diketopiperazine (DKP) formation of FPG8K. J. Phys. Chem. B 2021, 125, 11, 2952–2959. doi.org/10.1021/acs.jpcb.1c00269
  34. pub#272 permalink#272
  35. Miller, L. M.; Barnes, L. F.; Raab, S. A.; Draper, B. E.; El-Baba, T. J.; Lutomski, C. A.; Robinson, C. V.; Clemmer, D. E.; and Jarrold, M. F. Heterogeneity of Glycan Processing on Trimeric SARS-CoV-2 Spike Protein Revealed by Charge Detection Mass Spectrometry. J. Am. Chem. Soc. 2021, 143, 10, 3959–3966. doi.org/10.1021/jacs.1c00353
  36. pub#272 permalink#272
  37. McCabe, J. W.; Shirzaden, M.; Walker, T. E.; Lin, C., Jones, B. J.; Wysocki, V. H.; Barondeau, D. P.; Clemmer, D. E.; Laganowsky, A.; Russell, D. E. Variable-Temperature Electrospray Ionization for Temperature-Dependent Folding/Refolding Reactions of Proteins and Ligand Binding. Anal. Chem.. 2021, 93, 18, 6924–6931. doi.org/10.1021/acs.analchem.1c00870
  38. pub#272 permalink#272
  39. Sarbu, M.; Petrica, L.; Clemmer, D. E.; Vukelic, Z.; Zamfir, A. D. Gangliosides of Human Glioblastoma Multiforme: A Comprehensive Mapping and Structural Analysis by Ion Mobility Tandem Mass Spectrometry. J. Am. Soc. Mass Spectrom.. 2021, 32, 5, 1249–1257. doi.org/10.1021/jasms.1c00088
  40. pub#272 permalink#272
  41. Bera, S.; Dong, X.; Krishnarjuna, B.; Raab, S. A.; Hales, D. A.; Ji, W.; Tang, Y.; Shimon, L. J. W.; Ramamoorthy, A.; Clemmer, D. E.; Wei, G.; Gazit, E. Solid-state packing dictates the unexpected solubility of aromatic peptides Cell Rep. Phys. Sci. 2021, 2, 4, 100391. doi.org/10.1016/j.xcrp.2021.100391
  42. pub#272 permalink#272
  43. Inutan, E. D.; Jarois, D. R.; Lietz, C. B.; El-Baba, T. J.; Elia, E. A.; Karki, S.; Sampat, A. A. S.; Foley, C. D.; Clemmer, D. E.; Trimpin, S. Comparison of gaseous ubiquitin ion structures obtained from a solid and solution matrix using ion mobility spectrometry/mass spectrometry Rap. Com. Mass Spectrom.. 2021, 35, 1, 8793. doi.org/10.1002/rcm.8793
  44. pub#272 permalink#272

    2020


  45. PATENT Rizzo. T.; Masellis, C.; Kamarath, M. Z.; Clemmer, D. E.; Khanal, N. Method for characterizing polysaccharides. US Pattent Office. 2020. US10845337B2
  46. pub#272 permalink#272
  47. PATENT Clemmer, D. E.; Ewing, M. A. Closed path ion mobility spectrometer having a common ion inlet and outlet . US Pattent Office. 2020. US10788453B2
  48. pub#272 permalink#272
  49. Moghadamchargari Z,; Huddleston J,; Shirzadeh M,; Zheng X,; Clemmer D.E.,; Russell D.H.,; Laganowsky A. Intrinsic GTPase Activity of K-RAS Monitored by Native Mass Spectrometry. Biochemistry 2020, 58, 31,, 3396–3405,doi.org/10.1021/acs.biochem.9b00532
  50. pub#272 permalink#272
  51. Zhou X.; Brown B.A.; Siegel A.P.; El Masry M.S.; Zeng X.; Song W.; Das A.; Khandelwal P.; Clark A.; Singh K.; Guda P.R. Exosome-Mediated Crosstalk between Keratinocytes and Macrophages in Cutaneous Wound Healing. ACS nano. 2020, 14,10, 12732–12748,doi.org/10.1021/acsnano.0c03064
  52. pub#270 permalink#270
  53. Brown C.J.; Gaunitz S.; Wang Z.; Strindelius L.; Jacobson S.C.; Clemmer D.E.; Trinidad J.C.; Novotny M.V. Glycoproteomic Analysis of Human Urinary Exosomes. Anal. Chem. 2020, 92, 14357–14365, doi.org/10.1021/acs.analchem.0c01952
  54. pub#269 permalink#269
  55. Sarbu, M.; Clemmer, D. E.; Zamfir, A. D. Ion mobility mass spectrometry of Human Melanoma Gangliosides. J. Biochi. 2020, 177, 226–237, doi.org/10.1016/j.biochi.2020.08.011
  56. pub#268 permalink#268
  57. Raab, S. A.; El-Baba, T. J.; Woodall, D. W.; Liu, W.; Liu, Y.; Baird, Z.; Hales, D. A.; Laganowsky, A.; Russell, D. H.; Clemmer, D. E. Evidence for Many Unique Solution Structures for Chymotrypsin Inhibitor 2: A Thermodynamic Perspective Derived from vT-ESI-IMS-MS Measurements. J. Amer. Chem. Soc. 2020, 142,41, 17372–17383, DOI: 10.1021/jacs.0c05365
  58. pub#265 permalink#265
  59. Woodall, D. W.; Henderson, L. W.; Raab, S. A.; Honma, K.; Clemmer, D. E. Understanding the Thermal Denaturation of Myoglobin with IMS-MS: Evidence for Multiple Stable Structures and Trapped Pre-equilibrium States, J. Amer. Soc. Mass Spectrom. 2020, 32,1, 64–72, doi.org/10.1021/jasms.0c00075
  60. pub#265 permalink#265
  61. Austin, C.A.; Inutan, E.D.; Bohrer, B.C.; Li, J.; Fischer, J.L.; Wijerathane, K.; Foley, C.D.; Lietz, C.B.; Woodall, D.W.; Imperial, L.F.; Clemmer, D.E. Resolving Isomers of Star-Branched Poly (Ethylene Glycols) by IMS-MS using Multiply-Charged Ions. J. Amer. Soc. Mass Spectrom. 2020, 32,1, 21–32, doi.org/10.1021/jasms.0c00045
  62. pub#264 permalink#264
  63. Sarbu, M.; Raab, S. A.; Henderson, L.W.; Fabris, D.; Vukelić, Ž.; Clemmer, D. E.; Zamfirad, A. D. Cerebrospinal fluid: Profiling and fragmentation of gangliosides by ion mobility mass spectrometry. Biochimie. 2020, 170, 36–48,doi.org/10.1016/j.biochi.2019.12.008
  64. pub#263 permalink#263
  65. Woodall, D. W.; Brown, C. J.; Raab, S. A.; El-Baba, T. J.; Laganowsky, A.; Russel, D. H.; Clemmer, D. E. Melting of Hemoglobin in Native Solutions as measured by IMS-MS, Anal. Chem. 2020, 92,4, 3440–3446, doi.org/10.1021/acs.analchem.9b05561
  66. pub#262 permalink#262
  67. Brown, B. A.; Xuyao, Z. ; Todd, A. R.; Barnes, L. F.; Winstone, J. M. A.; Trinidad, J. C.; Novotny, M. V.; Jarrold, M. F.; Clemmer, D. E. Charge Detection Mass Spectrometry Measurements of Exosomes and other Extracellular Particles Enriched from Bovine Milk, Anal. Chem. , 2020, 92, 4, 3285–3292,doi.org/10.1021/acs.analchem.9b05173
  68. pub#261 permalink#261

    2019


  69. PATENT Ewing, M. A.; Clemmer, D. E.; Hybrid ion mobility spectrometer. US Pattent Office. 2019. US10234423B2
  70. pub#272 permalink#272
  71. Woodall, D. W.; El-Baba, T. J.; Fuller, D. R.; Liu, W..; Brown, C. J.; Laganowsky, A.; Russel, D. H.; Clemmer, D. E. Variable-Temperature ESI-IMS-MS Analysis of Myohemerythrin Reveals Ligand Losses, Unfolding, and a Non-Native Disulfide Bond, Anal. Chem. , 2019, 91, 10, 6808–6814, doi.org/10.1021/acs.analchem.9b00981
  72. pub#261 permalink#261
  73. Brown, C. J.; Grassmyer, K. T.; MacDonald, M.; Clemmer, D. E.; Trinidad, J. C. Glycoproteome Analysis of Human Serum and Brain Tissue, bioRxiv , 2019, doi.org/10.1101/647081
  74. pub#260 permalink#260
  75. Brown, C. J.; Woodall, D. W.; El-Baba, T. J.; Clemmer, D. E. Characterizing Thermal Transitions of IgG with Mass Spectrometry, J. Am. Soc. Mass Spectrom., DOI: doi.org/10.1007/s13361-019-02292-6
  76. pub#259 permalink#259
  77. Beckett, D.; El-Baba, T. J.; Gilbert, K.; Clemmer, D. E.; Raghavachari, K. Untangling Hydrogen Bond Networks with Ion Mobility Spectrometry and Quantum Chemical Calculations: A Case Study on H+XPGG, J. Phys. Chem. B., 2019, 123(27), 5370–5741, doi.org/10.1021/acs.jpcb.9b03803
  78. pub#258 permalink#258
  79. El-Baba, T. J.; Clemmer, D. E. Solution thermochemistry of concanavalin A tetramer conformers measured by variable-temperature ESI-IMS-MS, Int. J. Mass Spectrom., 2019, 443, 93–100, DOI: doi.org/10.1016/j.ijms.2019.06.004.
  80. pub#257 permalink#257
  81. Chen, X.; Raab, S.; Poe, T.; Clemmer, D. E.; Larriba-Andaluz, C. Determination of Gas-Phase Ion Structures of Locally Polar Homopolymers Through High-Resolution Ion Mobility Spectrometry–Mass Spectrometry, J. Am. Soc. Mass Spectrom., 2019, 30, 905–918, DOI: 10.1007/s13361-019-02184-9
  82. pub#256 permalink#256
  83. Dunbar, C. A.; Rayaprolu, V.; Wang, J. C.-Y.; Brown, C. J.; Leishman, E.; Jones-Burrage, S.; Trinidad, J. C.; Bradshaw, H. B.; Clemmer, D. E.; Mukhopadhyay, S.; Jarrold, M. F. Dissecting the Components of Sindbis Virus from Arthropod and Vertebrate Hosts: Implications for Infectivity Differences, ACS Infect Dis., 2019, 5, 6, 892–902, DOI: 10.1021/acsinfecdis.8b00356
  84. pub#255 permalink#255
  85. Conant, C. R.; Fuller, D. R.; Zhang, Z.; Woodall, D. W.; Russell, D. H.; Clemmer, D. E. Substance P in the Gas Phase: Conformational Changes and Dissociations Induced by Collisional Activation in a Drift Tube , J. Am. Soc. Mass Spectrom., 2019, 30, 932–945, DOI: 10.1007/s13361-019-02160-3
  86. pub#254 permalink#254
  87. Conant; C. R.; Fuller, D. R.; El-Baba, T. J.; Zhang, Z.; Russell, D. H.; Clemmer, D. E. Substance P in Solution: Trans-to-Cis Configurational Changes of Penultimate Prolines Initiate Non-enzymatic Peptide Bond Cleavages, J. Am. Soc. Mass Spectrom., 2019, 30, 919–931, DOI: 10.1039/C9SC00704K
  88. pub#253 permalink#253
  89. Sahota, N.; AbuSalim, D. I.; Wang, M. L.; Brown, C. J.; Zhang, Z.; El-Baba, T. J.; Cook, S. P.; Clemmer, D. E. A microdroplet-accelerated Biginelli reaction: mechanisms and separation of isomers using IMS-MS, Chem. Sci., 2019, 10, 4822–4827, DOI: 10.1039/C9SC00704K
  90. pub#252 permalink#252
  91. Fuller, D. R.; Conant, C. R.; El-Baba, T. J.; Zhang, Z.; Molloy, K. R.; Zhang, C. S.; Hales, D. A.; Russell, D. H.; Clemmer, D. E. Monitoring the stabilities of a mixture of peptides by mass-spectrometry-based techniques, EJMS., 2019, 25, 73–81
  92. permalink#250
  93. El-Baba, T. J.; Fuller, D. R.; Hales, D. A.; Russell, D. H.; Clemmer, D. E. Solvent Mediation of Peptide Conformations: Polyproline Structures in Water, Methanol, Ethanol, and 1-Propanol as Determined by Ion Mobility Spectrometry-Mass Spectrometry, J. Am. Soc. Mass Spectrom., 2019, 30, 77–84, DOI: 10.1007/s13361-018-2034-7
  94. pub#250 permalink#250

    2018


  95. PATENT Clemmer, D. E.; Ewing, M. A. Ion mobility spectrometer and method of operating same. US Pattent Office. 2018. US20190017963A1
  96. pub#272 permalink#272
  97. Musbat, L.; Assis, S.; Dilger, J. M.; El-Baba, T. J.; Fuller, D. R.; Knudsen, J. L.; Kiefer, H. V.; Hirshfeld, A.; Friedman, N.; Andersen, L. H.; Sheves, M.; Clemmer, D. E.; Toker, Y. Action and Ion Mobility Spectroscopy of a Shortened Retinal Derivative, J. Am. Soc. Mass Spectrom., 2018, 29, 2152–2159, DOI: 10.1007/s13361-018-2033-8
  98. permalink#249
  99. Beckett, D.; El-Baba, T. J.; Clemmer, D. E.; Raghavachari, K. Electronic Energies Are Not Enough: An Ion Mobility-Aided, Quantum Chemical Benchmark Analysis of H+GPGG Conformers, J. Chem. Theory Comput., 2018, 14, 5406–5418, DOI: 10.1021/acs.jctc.8b00648
  100. permalink#248
  101. Fuller, D. R.; Conant, C. R.; El-Baba, T. J.; Brown, C. J.; Woodall, D. W.; Russell, D. H.; Clemmer, D. E. Conformationally regulated peptide bond cleavage in bradykinin, J. Am. Chem. Soc., 2018, 140, 9357–9360, DOI: 10.1021/jacs.8b04751
  102. pub#247 permalink#247
  103. Lavine, B. K.; White, C. G.; Ding, T.; Gaye, M. M.; Clemmer, D. E. Wavelet based classification of MALDI-IMS-MS spectra of serum N-Linked glycans from normal controls and patients diagnosed with Barrett's esophagus, high grade dysplasia, and esophageal adenocarcinoma, Chemometrics and Intelligent Laboratory Systems, 2018, 176, 74–81, DOI: 10.1016/j.chemolab.2018.03.008
  104. permalink#246
  105. Khanal, N.; Gaye, M. M.; Clemmer, D. E. Multiple Solution Structures of the Disordered Peptide Indolicidin from IMS-MS Analysis, Int. J. Mass Spectrom. , 2018, 427, 52–58, DOI: 10.1016/j.ijms.2017.09.009
  106. pub#2454 permalink#245
  107. Brown, C. J.; Kaufman, T.; Trinidad, J. C.; Clemmer, D. E. Proteome changes in the aging Drosophila melanogaster, Int. J. Mass Spectrom., 2018, 425, 36–46, DOI: 10.1093/nar/gkx1087
  108. pub#244 permalink#244
  109. Sarbu, M; Vukelic, Z; Clemmer, D. E.; Zamfir, A. D. Ion mobility mass spectrometry provides novel insights into the expression and structure of gangliosides in normal adult human hippocampus , Analyst, 2018, 143, 5234–5246, DOI: 10.1039/C8AN01118D
  110. permalink#243
  111. El-Baba, T. J.; Fuller, D. R.; Woodall, D. W.; Raab, S. A.; Conant, C. R.; Dilger, J. M.; Toker, Y.; Williams, E. R.; Russell, D. H.; Clemmer, D. E. Melting Proteins Confined in Nanodroplets with 10.6 μm Light Provides Clues about Early Steps of Denaturation, Chem. Commun., 2018, 54, 3270–3273, DOI: 10.1039/C7CC09829D
  112. pub#242 permalink#242
  113. Khanal, N.; Masellis, C.; Kamrath, M. Z.; Clemmer, D. E.; Rizzo, T. R. Cryogenic IR spectroscopy Combined with Ion Mobility Spectrometry for the Analysis of Human Milk Oligosaccharides, Analyst, 2018, 143, 1846–1852, DOI: 10.1039/C8AN00230D
  114. permalink#241
  115. Jacobs, A. D.; Jovan Jose, K. V.; Horness, R.; Raghavachari, K.; Thielges, M. C.; Clemmer, D. E. Cooperative Formation of Icosahedral Proline Clusters from Dimers, J. Am. Soc. Mass Spectrom., 2018, 29, 95–102, DOI: 10.1007/s13361-017-1833-6
  116. pub#240 permalink#240
  117. Glauninger, H.; Zhang, Y.; Higgins, K. A.; Jacobs, A. D.; Martin, J. E.; Fu, Y.; Coyne, H. J.; Bruce, K. E.; Maroney, M. J.; Clemmer, D. E.; Capdevila, D. A.; Giedroc, D. P. Metal-dependent allosteric activation and inhibition on the same molecular scaffold: the copper sensor CopY from Streptococcus pneumoniae Chem. Sci., 2018, 9, 105–118, DOI: 10.1039/C7SC04396A
  118. pub#239 permalink#239
  119. Gilmore, C.; Dsch, M.; Sward, E.; Hales, D.; Fuller, D.; El-Baba, T.; Clemmer D. E. Activation parameters for peptide cleavage at the penultimate residue: Dependence on identity of Yyy in XxxYyyGlyGly. Abstracts of Papers Am. Chem. Soc. 2018
  120. Dsch, M.; Sward, E.; Gilmore, C.; Hales, D.; Fuller, D.; El-Baba, T.; Clemmer D. E. Measurement of the activation parameters for fragmentation at penultimate proline in three tetrapeptides. Abstracts of Papers Am. Chem. Soc. 2018
  121. 2017


  122. PATENT Clemmer, D. E.; Ewing, M. A. Ion mobility spectrometer and method of operating same. US Pattent Office. 2017. US10024821B2
  123. pub#272 permalink#272
  124. Glass, A. T.; Dickerson, K.; Hales, D. E.; El-Baba, T. J.; Clemmer, D. E. Survey of proline conformational behavior in protonated gas-phase XxxProGlyGly. Abs. Papers Amer. Chem. Soc. , 2017
  125. Dickerson, K.; Glass, A. T.; Hales, D. E.; El-Baba, T. J.; Clemmer, D. E. Gas-phase measurement of the barrier to cis-trans interconversion of proline in a tetrapeptide. Abs. Papers Amer. Chem. Soc. , 2017
  126. Jacobs, A. D.; Hoover, H.; Smith, E.; Clemmer, D. E., Kim, C.; Kao, C. The intrinsically disordered N-terminal arm of the brome mosaic virus coat protein specifically recognizes the RNA motif that directs the initiation of viral RNA replication, Nucleic Acids Research., 2017, 46, 324–335, DOI: 10.1093/nar/gkx1087
  127. pub#238 permalink#238
  128. Masellis, C.; Khanal, N.; Kamrath, M. Z.; Clemmer, D. E.; Rizzo, T. R. Cryogenic Vibrational Spectroscopy Provides Unique Fingerprints for Glycan Identification, J. Am. Soc. Mass Spectrom., 2017, 10, 2217–2222, DOI: 10.1007/s13361-017-1728-6
  129. pub#237 permalink#237
  130. Wagner, N.; Clemmer, D. E.; Russell, D. H. ESI-IM-MS and Collision-Induced Unfolding Provide Insight into the Linkage Dependent Interfacial Interactions of Covalently Linked Diubiquitin, Anal. Chem., 2017, 89, 10094–10103, DOI: 10.1021/acs.analchem.7b02932
  131. pub#236 permalink#236
  132. Khanal, N.; Masellis, C.; Kamrath, M. Z.; Clemmer, D. E.; Rizzo, T. R. Glycosaminoglycan analysis by cryogenic messenger-tagging IR spectroscopy combined with IMS-MS, Anal. Chem., 2017, 89, 7601–7606, DOI: 10.1021/acs.analchem.7b01467
  133. pub#235 permalink#235
  134. Sarbu, M.; Vukelic, Z.; Clemmer, D. E.; Zamfir, A. D. Electrospray ionization ion mobility mass spectrometry provides novel insights into the pattern and activity of fetal hippocampus gangliosides, Biochimie., 2017, 139, 81–94, DOI: 10.1016/j.biochi.2017.05.016
  135. pub#234 permalink#234
  136. El-Baba, T. J.; Woodall, D. W.; Raab, S. A.; Fuller, D. R.; Laganowsky, A.; Russell, D. H.; Clemmer, D. E. Melting Proteins: Evidence for Multiple Stable Structures upon Thermal Denaturation of Native Ubiquitin from IMS-MS Measurements, J. Am. Chem. Soc., 2017, 139, 6306–6309, DOI: 10.1021/jacs.7b02774
  137. pub#233 permalink#233
  138. Dilger, J. M.; Glover, M. S.; Clemmer, D. E. A Database of Transition-Metal-Coordinated Peptide Cross-Sections: Selective Interaction with Specific Amino Acid Residues, J. Am. Soc. Mass Spectrom., 2017, 28, 1293–1303, DOI: 10.1007/s13361-016-1592-9
  139. pub#232 permalink#232
  140. Clemmer, D. E.; Russell, D. H.; Williams, E. R. Characterizing the Conformationome: Toward a Structural Understanding of the Proteome, Acc. Chem. Res., 2017, 50, 556–560, DOI: 10.1021/acs.accounts.6b00548
  141. pub#231 permalink#231
  142. Kim, D.; Wagner, N.; Wooding, K.; Clemmer, D. E.; Russell, D. H. Ions from Solution to the Gas Phase: A Molecular Dynamics Simulation of the Structural Evolution of Substance P During Desolvation of Charged Nanodroplets Generated by Electrospray Ionization, J. Am. Chem. Soc., 2017, 139, 2981–2988, DOI:10.1021/jacs.6b10731
  143. pub#230 permalink#230
  144. Musbat, L.; Nihamkin, M.; Toker, Y.; Dilger, J. M.; Fuller, D. R.; El-Baba, T. J.; Clemmer, D. E.; Sarkar, S.; Kronic, L.; Hirshfeld, A.; Friedman, N.; Sheves, M. Measurements of the stabilities of isolated retinal chromophores, Phys. Rev. E, 2017, 95, 012406-1–012406-7, DOI:10.1103/PhysRevE.95.012406
  145. pub#229 permalink#229
  146. Gaye, M. M.; Ding, T.; Shion, H.; Hussein, A.; Hu, Y.; Zhou, S.; Hammoud, Z. T.; Lavine, B. K.; Mechref, Y.; Gebler, J. C.; Clemmer, D. E. Delineation of Disease Phenotypes Associated with Esophageal Adenocarcinoma by MALDI-IMS-MS Analysis of Serum N-linked Glycans, Analyst, 2017, 142, 1525–1535, DOI: 10.1039/C6AN02697D
  147. pub#228 permalink#228
  148. Zhu, F.; Clemmer, D. E.; Trinidad, J. C. Characterization of lectin binding affinities via direct LC-MS profiling: implications for glycopeptide enrichment and separation strategies, Analyst, 2017, 142, 65–74, DOI:10.1039/C6AN02043G
  149. pub#227 permalink#227

    Published:


    2016


  150. PATENT Clemmer, D. E.; Ewing, M. A.; Zucker, S. M.; Conant, C. R. Ion mobility spectrometer and method of operating same. US Pattent Office. 2016. US9368333B2
  151. pub#272 permalink#272
  152. Rogers, D.; El-Baba, T. J.; Shi, L.; Khan, F.; Kim, D.; Hales, D. E.; Russel, D. E.; Clemmer, D. E. Histidine-modified polyproline-13 explores the nature of two-state cooperativity. Abs. Papers Amer. Chem. Soc. , 2016
  153. Clemmer, D. E. Pathways and thermodynamics of polyproline helix formation in solution from measurements of ions in the gas phase. Abs. Papers Amer. Chem. Soc. , 2016
  154. Fuller, D.; Clemmer, D. E. Developing IMS-MS technologies for analysis of peptide conformations and thermochemistry of binding in solution. Abs. Papers Amer. Chem. Soc. , 2016
  155. El-Baba, T. J.; Kim, D.; Rogers, D. B.; Khan, F. A.; Hales, D. A.; Russell, D. H.; Clemmer, D. E. Long-lived Intermediates in a Cooperative Two-State Folding Transition, J. Phys. Chem. B , 2016, 120, 12040–12046, DOI:10.1021/acs.jpcb.6b08932
  156. pub#226 permalink#226
  157. Barr, J. D.; Shi, L.; Russell, D. H.; Clemmer, D. E.; Holliday, A. E. Following a Folding Transition with Capillary Electrophoresis and Ion Mobility Spectrometry, Anal. Chem., 2016, 88, 10933–10939, DOI:10.1021/acs.analchem.6b02424
  158. pub#225 permalink#225
  159. Fuller, D.R.; Glover, M.S.; Pierson, N.A.; Kim, D.; Russell, D.H.; Clemmer, D.E. Cis→trans isomerization of Pro7 in Oxytocin regulates Zn2+ binding, J. Am. Soc. Mass. Spectrom., 2016, 27, 1–7, DOI:10.1007/s13361-016-1410-4
  160. pub#224 permalink#224
  161. Voronina, L.; Masson, A.; Kamrath, M.; Schubert, F.; Clemmer, D. E.; Baldauf, C.; Rizzo, T. Conformations of prolyl-peptide bonds in the bradykinin 1-5 fragment in solution and in the gas phase, J. Am. Chem. Soc., 2016, 138, 9224–9233, DOI:10.1021/jacs.6b04550
  162. pub#223 permalink#223
  163. Chatterjee, B.; Makarov, A.; Clemmer, D.E.; Steen, H.; Steen, J.; Saffell-Clemmer, W.; Moghekar, A. R.; Mohan Rao, C.; Bradshaw, R. A.; Thakur, S. S. Proteomics in India: A Report on Brainstorming Meeting at Hyderabad, India, Mol. Cell. Proteomics , 2016, DOI: 10.1074/mcp.O115.055020
  164. pub#222 permalink#222
  165. Shi, L.; Holliday, A. E.; Bohrer, B. C.; Kim, D.; Servage, K. A.; Russell, D. H.; Clemmer, D. E. "Wet" Versus "Dry" Folding of Polyproline, J. Am. Soc. Mass Spectrom., 2016, 27, 1037–1047, DOI:10.1007/s13361-016-1343-y
  166. pub#221 permalink#221
  167. Glover, M. S.; Dilger, J. M.; Acton, M. D.; Arnold, R. J.; Radivojac, P.; Clemmer, D. E. Examining the Influence of Phosphorylation on Peptide Ion Structure by Ion Mobility Spectrometry-Mass Spectrometry, J. Am. Soc. Mass Spectrom., 2016, 27, 786–794, DOI:10.1007/s13361-016-1343-y
  168. pub#220 permalink#220
  169. Sarbu, M.; Robu, A. C.; Ghiulai, R.; Vukelic, Z.; Clemmer, D. E.; Zamfir, A. D. Electrospray ionization ion mobility mass spectrometry of human brain gangliosides, Anal. Chem., 2016, 88, 5166–6178, DOI:10.1021/acs.analchem.6b00155
  170. pub#219 permalink#219
  171. Ewing, M. A.; Glover, M. S.; Clemmer, D. E. Hybrid Ion Mobility and Mass Spectrometry as a Separation Tool, Journal of Chromatography A , 2016, 1439, 3–25, DOI: 10.1016/j.chroma.2015.10.080
  172. pub#218 permalink#217
  173. Gaye, M. M.; Nagy, G.; Clemmer, D. E.; Pohl, N. L. B. Multidimensional Analysis of 16 Glucose Isomers by Ion Mobility Spectrometry, Anal. Chem., 2016, 88, 2335–2334, DOI:10.1021/acs.analchem.5b04280
  174. pub#217 permalink#217
  175. Shi, L.; Holliday, A. E.; Glover, M. S.; Ewing, M. A.; Russell, D. H.; Clemmer, D. E. Ion Mobility-Mass Spectrometry Reveals the Energetics of Intermediates that Guide Polyproline Folding, J. Am. Soc. Mass Spectrom. , 2016, 27, 22–30, DOI: 10.1007/s13361-015-1255-2
  176. pub#216 permalink#216

    2015


  177. PATENT Clemmer, D. E.; Ewing, M. A.; Zucker, S. M.; Conant, C. R. Ion mobility spectrometer and method of operating same. US Pattent Office. 2015. US9129782B2
  178. pub#272 permalink#272
  179. Servage, K. A.; Silveira, J. A.; Fort, K. L.; Clemmer, D.E., Russell, D. H. Water-Mediated Dimerization of Ubiquitin Ions Captured by Cryogenic Ion Mobility-Mass Spectrometry, J. Phys. Chem. Lett., 2015, 6, 4947–4951, DOI:10.1021/acs.jpclett.5b02382
  180. pub#215 permalink#215
  181. Sarbu, M.; Zhu, F.; Peter-Katalinic, J.; Clemmer, D. E.; Zamfir, A. D. Application of Ion Mobility Tandem Mass Spectrometry To Compositional and Structural Analysis of Glycopeptides Extracted From The Urine of a Patient Diagnosed With Schindler Disease, Rapid Commun. Mass Spectrom, 2015, 29, 1929–1937, DOI: 10.1002/rcm.7288
  182. pub#214 permalink#214
  183. Jacobs, A. D.; Chang, F. M.; Morrison, L.; Dilger, J. M.; Wysocki, V. H.; Clemmer, D. E.; Giedroc, D. P. Resolution of stepwise cooperativities of copper binding by the homotetrameric copper sensitive operon repressor (CsoR): Impact on structure and stability, Angew. Chem. Int. Ed. , 2015, 127, 12986–12990, DOI: 10.1002/anie.201506349
  184. pub#213 permalink#213
  185. Masson, A.; Kamrath, M. Z.; Perez; M. A. S.; Glover, M. S.; Rothlisberger, U.; Clemmer, D. E.; Rizzo, T. R. Infrared spectroscopy of the mobility selected ions of H+ - Gly-Pro-Gly-Gly (GPGG), J. Am. Soc. Mass Spectrom., 2015, 26, 1444–1454
  186. pub#212 permalink#212
  187. Lee, S.; Glover. M. S.; Reilly, J. P.; Clemmer, D. E. Photosynthesis of a Combinatorial Peptide Library in the Gas Phase, Anal. Chem., 2015, 87, 9384–9388, DOI: 10.1021/acs.analchem.5b02179
  188. pub#211 permalink#211
  189. Khanal, N.; Pejaver, V.; Li, Z.; Radivojac, P.; Clemmer, D. E.; Mukhopadhyay, S. Position of Proline Mediates The Reactivity of S-palmitoylation, ACS Chem. Biol., 2015, 10, 2529–2536, DOI:10.1021/acschembio.5b00429
  190. pub#210 permalink#210
  191. Snijder, J.; Waterbeemd, M.; Glover, M. S.; Shi, L.; Clemmer, D. E.; Heck, J. R. Conformational landscape and pathway of disulfide bond reduction of human alpha defensin, Protein Science, 2015, 24, 1264–1271, DOI:10.1002/pro.2694
  192. pub#209 permalink#209
  193. Glover, M. S.; Bellinger, E. P.; Radivojac, P.; Clemmer, D. E. Penultimate Proline in Neuropeptides, Anal. Chem., 2015, 87, 8466–8472, DOI: 10.1021/acs.analchem.5b01889
  194. pub#208 permalink#208
  195. Servage, K. A.; Fort, K.; Silveira, J.; Shi, L.; Clemmer, D. E.; Russell, D. H. Unfolding of Hydrated Alkyl Diammonium Cations Revealed by Cryogenic Ion Mobility-Mass Spectrometry, J. Am. Chem. Soc., 2015, 137, 8916–8919, DOI: 10.1021/jacs.5b05448
  196. pub#207 permalink#207
  197. Shi, L.; Holliday, A. E.; Khanal, N.; Russell, D. H.; Clemmer, D. E. Configurationally-Coupled Protonation of Polyproline-7, J. Am. Chem. Soc., 2015, 137, 8680–8683, DOI: 10.1021/jacs.5b04287
  198. pub#206 permalink#206
  199. Zhu, F.; Trinidad, J. C.; Clemmer, D. E. Glycopeptide Site Heterogeneity and Structural Diversity Determined by Combined Lectin Affinity Chromatography/IMS/CID/MS Techniques, J. Am. Soc. Mass Spectrom., 2015, 26, 1092–1102
  200. pub#205 permalink#205
  201. Ewing, M. A.; Conant, C. R. P.; Zucker, S. M.; Griffith, K. J.; Clemmer, D. E. Selected Overtone Mobility Spectrometry, Anal. Chem., 2015, 87, 5132–5138.
  202. pub#204 permalink#204
  203. Dilger, J.; Musbat, L.; Sheves, M.; Bochenkova, A. V.; Clemmer, D. E., Toker, Y. Direct Measurement of the Isomerization Barrier of the Isolated Retinal Chromophore, Angew. Chem. Int. Ed., 2015, 54, 1–6.
  204. pub#203 permalink#203
  205. Glover, M. S.; Shi, L.; Fuller, D. R.; Arnold, R. J.; Radivojac, P.; Clemmer, D. E. On the Split Personality of Penultimate Proline, J. Am. Soc. Mass Spectrom., 2015, 26, 444–452.
  206. pub#202 permalink#202
  207. Pierson, N. A.; Clemmer. D. E. An IMS-IMS threshold method for semi-quantitative determination of activation barriers: Interconversion of proline cis↔trans forms in triply protonated bradykinin, Int. J. Mass Spectrom., 2015, 377, 646–654.
  208. pub#201 permalink#201
  209. Gaye, M. M.; Kurulugama, R; Clemmer, D. E. Investigating Carbohydrate Isomers by IMS-CID-IMS-MS: Precursor and Fragment Ion Cross-sections, Analyst , 2015, 140, 6922–6932, DOI:10.1039/C5AN00840A
  210. pub#200 permalink#200
  211. Larriba-Andaluz, C.; Fernandez-Garcia, J.; Ewing, M. A.; Hogan, C. J.; Clemmer, D. E. Gas Molecule Scattering & Ion Mobility Measurements for Organic Macro-ions in He versus N2 Environments, Phys. Chem. Chem. Phys., 2015, 17, 15019–15029
  212. pub#199 permalink#199
  213. Zhu, F.; Glover, M. S.; Shi, H.; Trinidad, J. C.; Clemmer. D. E. Populations of Metal-Glycan Structures Influence MS Fragmentation Patterns, J. Am. Soc. Mass Spectrom., 2015, 26, 25–35.
  214. pub#199 permalink#198

    2014


  215. PATENT Clemmer, D. E.; Ewing, M. A.; Zucker, S. M.; Conant, C. R. Ion mobility spectrometer and method of operating same. US Pattent Office. 2014. US8872102B2
  216. pub#272 permalink#272
  217. Shi, H.; Atlasevich, N.; Merenbloom, S. I.; Clemmer. D. E. Solution Dependence of the Collisional Activation of Ubiquitin [M+7H]7+ Ions, J. Am. Soc. Mass Spectrom. , 2014, 25, 2000–2008.
  218. pub#197 permalink#197
  219. Fort, K. L.; Silveira, J. A.; Pierson, N. A.; Servage, K. A.; Clemmer, D. E.; Russell, D. H. From Solution to the Gas Phase: Factors That Influence Kinetic Trapping of Substance P in the Gas Phase, J. Phys. Chem. B, 2014, 118, 14336–14344.
  220. pub#196 permalink#196
  221. Shi, L.; Holliday, A. E.; Shi, H.; Zhu, F.; Ewing, M. A.; Russell, D. H.; Clemmer. D. E. Characterizing Intermediates along the Transition from Polyproline I to Polyproline II using Ion Mobility Spectrometry-Mass Spectrometry, J. Am. Chem. Soc., 2014, 136, 12702–12711.
  222. pub#195 permalink#195
  223. Larriba, C.; Fernandez de la Mora, J.; Clemmer. D. E. Electrospray Ionization Mechanisms for Large Polyethylene Glycol Chains studied through Tandem Ion Mobility Spectrometry, J. Am. Soc. Mass Spectrom., 2014, 25, 1332–1345.
  224. pub#194 permalink#194
  225. Li, Z.; Dilger, J. M.; Pejaver, V.; Smiley, D.; Arnold, R. J.; Mooney, S. D.; Mukhopadhyay, S.; Radivojac, P.; Clemmer. D. E. Intrinsic Size Parameters for Palmitoylated and Carboxyamidomethylated Peptides, Int. J. Mass Spectrom., 2014, 368, 6–14.
  226. pub#193 permalink#193
  227. Wyttenbach, T.; Pierson, N. A.; Clemmer. D. E.; Bowers, M. T. Ion Mobility Analysis of Molecular Dynamics, Annu. Rev. Phys. Chem. , 2014, 65, 175–196.
  228. pub#192 permalink#192
  229. Shi, H.; Clemmer. D. E. Evidence for Two New Solution States of Ubiquitin by IMS-MS Analysis, J. Phys. Chem. B, 2014, 118, 3498–3506.
  230. pub#191 permalink#191
  231. Johnson, A. R.; Dilger, J. M.; Glover, M. S.; Clemmer. D. E., Carlson, E. E. Negatively-Charged Helices in the Gas Phase, Chem. Comm., 2014, 50, 8849–8851.
  232. pub#190 permalink#190

    2013


  233. PATENT Clemmer, D. E.; Koeniger, S. L.; VAlentine, S. J. Ion mobility spectrometer with one or more integral ion activation regions . US Pattent Office. 2013. US8618475B2
  234. pub#272 permalink#272
  235. PATENT Clemmer, D. E.; Kurulugama, R. T.; Nachtigall, F. M.; Henson, Z.; Merenbloom, S. I.; Valentine, S. J. Ion mobility spectrometer instrument and method of operation. US Pattent Office. 2013. US8513591B2
  236. pub#272 permalink#272
  237. PATENT Clemmer, D. E.; Merenbloom, S. I.; Koeniger, S. L.; Valentine, S. J. Apparatus and methods for analyzing ions . US Pattent Office. 2013. US8362420B2
  238. pub#272 permalink#272
  239. Silveira, J. A.; Fort, K. L.; Pierson, N. A.; Clemmer, D. E.; Russell, D. H. From Solution to the Gas Phase: Stepwise Dehydration and Kinetic Trapping of Substance P Reveals the Origin of Peptide Conformations, J. Am. Chem. Soc., 2013, 135, 19147–19153.
  240. pub#189 permalink#189
  241. Glover, M. S.; Dilger, J. M.; Zhu, F.; Clemmer, D. E. The Binding of Ca2+, Co2+, Ni2+, Cu2+, and Zn2+ Cations to Angiotensin I Determined by Mass Spectrometry based Techniques, Int. J. Mass Spectrom., 2013, 354-355, 318–325.
  242. pub#188 permalink#188
  243. Zucker, S. M.; Ewing, M. A.; Clemmer, D. E. Gridless Overtone Mobility Spectrometry, Anal. Chem., 2013, 85,10174–10179.
  244. pub#187 permalink#187
  245. Glaskin, R. S.; Ewing, M. A.; Clemmer, D. E. Ion Trapping for Ion Mobility Spectrometry Measurements in a Cyclical Drift Tube, Anal. Chem., 2013, 85, 7003–7008.
  246. pub#186 permalink#186
  247. Dilger, J. M.; Valentine, S. J.; Glover, M. S; Clemmer, D. E. A Database of Alkaline-earth-coordinated Peptide Cross Sections: Insights into General Aspects of Structure. J. Am. Soc. Mass Spectrom., 2013, 24, 768–779.
  248. pub#185 permalink#185
  249. Ewing, M. A.; Zucker, S. M.; Valentine, S. J.; Clemmer, D. E. Overtone Mobility Spectrometry: Part 5. Simulations and Analytical Expressions Describing Overtone Limits. J. Am. Soc. Mass Spectrom., 2013, 24, 615–621.
  250. pub#184 permalink#184
  251. Pierson, N. A.; Chen, L.; Russell, D. H.; Clemmer, D. E. Cis–Trans Isomerizations of Proline Residues are Key to Bradykinin Conformations. J. Am. Chem. Soc., 2013, 135, 3186–3192.
  252. pub#183 permalink#183
  253. Shi, H.; Gu, L.; Clemmer, D. E.; Robinson, R. A. S. Effects of Fe(II)/H2O2 Oxidation on Ubiquitin Conformers Measured by Ion Mobility-Mass Spectrometry. J. Phys. Chem. B, 2013, 117, 164–173.
    pub#182 permalink#182
  254. 2012


  255. Dilger, J. M.; Valentine, S. J.; Glover, M. S.; Ewing, M. A.; Clemmer, D. E. A Database of Alkali Metal-Containing Peptide Cross Sections: Influence of Metals on Size Parameters for Specific Amino Acids. Int. J. Mass Spectrom., 2012, 330-332, 35–45.
    pub#181 permalink#181
  256. Rodgers, M. T.; Clemmer, D. E. A celebration of the scientific and personal contributions of Peter B. Armentrout. Int. J. Mass Spectrom., 2012, 330-332, 4–5.
    permalink#180
  257. Rodgers, M. T.; Clemmer, D. E. An Appreciation. Int. J. Mass Spectrom., 2012, 330-332, 2–3.
    permalink#179
  258. Gaye, M. M.; Valentine, S. J.; Hu, Y.; Mirjankar, N.; Hammoud, Z. T.; Mechref, Y.; Lavine, B. K.; Clemmer, D. E. Ion Mobility-Mass Spectrometry Analysis of Serum N-Linked Glycans from Esophageal Adenocarcinoma Phenotypes. J. Prot. Res., 2012, 11, 6102–6110.
    pub#178 permalink#178
  259. Zhu, F.; Lee, S.; Valentine, S. J.; Reilly, J. P.; Clemmer, D. E. Mannose7 Glycan Isomer Characterization by IMS-MS/MS Analysis. J. Am. Soc. Mass Spectrom., 2012, 23, 2158–2166.
    pub#177 permalink#177
  260. Atlasevich, N.; Holliday, A.; Valentine, S. J.; Clemmer, D. E. Chirality and Packing in Small Proline Clusters. J. Phys. Chem. B, 2012, 116, 11442–11446.
    pub#176 permalink#176
  261. Holliday, A.; Atlasevich, N.; Myung, S.; Plasencia, M. D.; Valentine, S. J.; Clemmer, D. E. Oscillations for Chiral Preference in Proline Clusters. J. Phys. Chem. A., 2013, 117, 1035–1041.(Special Issue in honor of Peter B. Armentrout Festschrift)
    pub#175 permalink#175
  262. Atlasevich, N.; Holliday, A.; Valentine, S. J.; Clemmer, D. E. Collisional Activation of [14Pro+2H]2+ Clusters: Chiral Dependence of Evaporation and Fission Processes. J. Phys. Chem. B., 2012, 116, 7644–7651.
    pub#174 permalink#174
  263. Lee, S.; Julian, R. R.; Valentine, S. J.; Reilly, J. P., Clemmer, D. E. Biomolecular condensation via ultraviolet excitation in vacuo. Int. J. Mass Spectrom., 2012, 316–318, 6–11.
    pub#173 permalink#173
  264. Shi, H.; Pierson, N. A.; Valentine, S. J.; Clemmer, D. E. Conformation Types of Ubiquitin [M+8H]8+ Ions from Water: Methanol Solutions: Evidence for the N and A States in Aqueous Solution. J. Phys. Chem. B, 2012, 116, 3344–3352.
    pub#172 permalink#172
  265. Isailovic, D.; Plasencia, M.; Gaye, M.; Stokes, S.; Kurulugama, R.; Pungpapong, V.; Zhang, M.; Kyselova, Z.; Goldman, R.; Mechref, Y.; Novotny, M. V.; Clemmer, D. E. Delineating Diseases by IMS–MS Profiling of Serum N–linked Glycans. J. Proteome Res. 2012, 11, 576–585.
    pub#171 permalink#171
  266. Lee, S.; Valentine, S. J.; Reilly, J. P.; Clemmer, D. E. Analyzing a Mixture of Disaccharides by IMS–VUVPD–MS. Int. J. Mass Spectrom., 2012, 309, 161–167.
    pub#170 permalink#170
  267. Lee, S.; Li, Z.; Valentine, S. J.; Zucker, S. M.; Webber, N.; Reilly, J. P.; Clemmer, D. E. Extracted Fragment Ion Mobility Distributions: A New Method for Complex Mixture Analysis. Int. J. Mass Spectrom., 2012, 309, 154–160.
    pub#169 permalink#169
  268. 2011


  269. Kurulugama, R. T.; Nachtigall, F. M.; Valentine, S. J.; Clemmer, D. E. Overtone Mobility Spectrometry (Part 4): OMS–OMS Analyses of Complex Mixtures. J. Am. Soc. Mass Spectrom. 2011, 22, 2049–2060.
    pub#168 permalink#168
  270. Lee, S.; Valentine, S. J.; Reilly, J. P.; and Clemmer, D. E. Controlled Formation of Peptide Bonds in the Gas–Phase. J. Am. Chem. Soc., 2011, 133, 15834–15837.
    pub#167 permalink#167
  271. Pierson, N. A.; Chen, L., Valentine, S. J.; Russell, D. H.; Clemmer, D. E. Number of Solution States of Bradykinin from Ion Mobility and Mass Spectrometry Measurements. J. Am. Chem. Soc., 2011, 133, 13810–13813.
    pub#166 permalink#166
  272. Bohrer, B. C. and Clemmer, D.E. Biologically-Inspired Peptide Reagents for Enhancing IMS–MS Analysis of Carbohydrates. J. Am. Soc. Mass Spectrom., 2011, 22, 1602–1609.
    pub#165 permalink#165
  273. Zucker, S. M.; Lee, S.; Webber, N.; Valentine, S. J.; Reilly, J. P. and Clemmer, D. E. An Ion Mobility/Ion Trap/Photodissociation Instrument for Characterization of Ion Structure. J. Am. Soc. Mass Spectrom., 2011, 22, 1477–1485.
    pub#164 permalink#164
  274. Jung, J. E.; Pierson, N. A.; Marquardt, A.; Scheffner, M.; Przybylski, M., Clemmer, D. E. Differentiation of Compact and Extended Conformations of Di-Ubiquitin Conjugates with Lysine-Specific Isopeptide Linkages Revealed by Ion Mobility Mass Spectrometry. J. Am. Soc. Mass Spectrom. 2011, 22, 1463–1471.
    pub#163 permalink#163
  275. Bohrer, B. C. and Clemmer, D.E. Shift Reagents for Multidimensional Ion Mobility Spectrometry–Mass Spectrometry Analysis of Complex Peptide Mixtures: Evaluation of 18-Crown-6 Ether Complexes. Anal. Chem., 2011, 83, 5377–5385.
    pub#162 permalink#162
  276. Valentine, S. J.; Ewing, M.; Dilger, J. M.; Glover, M.; Geromanos, S.; Hughes, C.; Clemmer, D. E. Using Ion Mobility Data to Improve Peptide Identification: Cross Section Databases and Intrinsic Amino Acid Size Parameters. J. Proteome Res., 2011, 10, 2318–2329.
    pub#161 permalink#161
  277. Valentine, S. J.; Kurulugama, R. T.; Clemmer, D. E. Overtone Mobility Spectrometry (Part 3): On the Origin of Peaks. J. Am. Soc. Mass. Spectrom. 2011, 22, 804–16.
    pub#160 permalink#160
  278. Li, Z.; Valentine, S. J.; Clemmer, D. E. Complexation of Amino Compounds by 18C6 Improves Selectivity by IMS–IMS–MS: Application to Petroleum Characterization. J. Am. Soc. Mass. Spectrom. 2011, 22, 817–27.
    pub#159 permalink#159
  279. Bohrer, B. C.; Atlasevich, N.; Clemmer, D. E. Transitions between Elongated Conformations of Ubiquitin [M+11H]11+ Enhance Hydrogen/Deuterium Exchange. J. Phys. Chem. B 2011, 115, 4509–4515.
    pub#158 permalink#158
  280. 2010


  281. PATENT Clemmer, D. E.; Kurulugama, R. T.; Nachtigall, F. M.; Henson, Z.; Merenbloom, S. I.; Valentine, S. J. Ion mobility spectrometer instrument and method of operating same. US Pattent Office. 2010. US7838821B2
  282. pub#272 permalink#272
  283. Bohrer, B. C.; Li, Y. F.; Reilly, J. P.; Clemmer, D. E.; Di Marchi, R. D.; Radivojac, P.; Tang, H.; Arnold, R. J. Combinatorial Libraries of Synthetic Peptides as a Model for Shotgun Proteomics. Anal. Chem. 2010, 82, 6559–6568.
    pub#157 permalink#157
  284. Kim, T.-Y.; Valentine, S. J.; Clemmer, D. E.; Reilly, J. P. Gas-Phase Conformation-Specific Photofragmentation of Proline-Containing Peptide Ions. J. Am. Soc. Mass Spectrom. 2010, 21, 1455–1465.
    pub#156 permalink#156
  285. Trimpin, S.; Clemmer, D. E.; and Larsen, B. S. Snapshot, Conformation, and Bulk Fragmentation of Polymeric Architectures using ESI–IMS–MS, in Ion Mobility Spectrometry–Mass Spectrometry: Theory and Applications, CRC Press:2010, 215–235.
    permalink#155
  286. Glaskin, R. S.; Valentine, S. J.; Clemmer, D. E. A Scanning Frequency Mode for Ion Cyclotron Mobility Spectrometry. Anal. Chem. 2010, 82, 8266–8271.
    pub#154 permalink#154
  287. Shvartsburg, A. A.; Clemmer, D. E.; Smith, R. D. Isotopic Effect on Ion Mobility and Separation of Isotopomers by High-Field Ion Mobility Spectrometry. Anal. Chem. 2010, 82, 8047–8051.
    pub#153 permalink#153
  288. Lee, S.; Ewing, M. A.; Nachtigall, F. M.; Kurulugama, R. T.; Valentine, S. J.; Clemmer, D. E. Determination of Cross Sections by Overtone Mobility Spectrometry: Evidence for Loss of Unstable Structures at Higher Overtones. J. Phys. Chem. B 2010, 114, 12406–12415.
    pub#152 permalink#152
  289. Robinson, R. A. S.; Kellie, J. F.; Kaufman, T. C.; Clemmer, D. E. Insights into aging through measurements of the Drosophila proteome as a function of temperature. Mechanisms of Ageing and Development 2010, 131, 584–590.
    pub#151 permalink#151
  290. [Note, 150 is an erratum] Plasencia, M. D.; Isailovic, D.; Merenbloom, S. I.; Mechref, Y.; Novotny, M. V.; Clemmer, D. E. Resolving and Assigning N–linked Glycan Structural Isomers from Ovalbumin by IMS–MS. J. Am. Soc. Mass Spectrom. 21, 2010, 191 [Ref 137: 19, 2008, 1706–1715].
    pub#150 permalink#150
  291. Pierson, N. A.; Valentine, S. J.; Clemmer, D. E. Evidence for a Quasi-Equilibrium Distribution of States for Bradykinin [M+3H]3+ Ions in the Gas Phase. J. Phys. Chem. B, 2010, 114, 7777–7783.
    pub#149 permalink#149
  292. Liu, X.; Afrane, M.; Clemmer, D. E.; Zhong, G.; Nelson, D. E. Identification of Chlamydia trachomatis outer membrane complex proteins by differential proteomics. J Bacteriol. 2010, 192, 2852–2860.
    pub#148 permalink#148
  293. 2009


  294. Xun, Z.; Kaufman, T. C.; Clemmer, D. E. Stable Isotope labeling and label-free proteomics of Drosophila parkin null mutants. J. Proteome Research, 2009, 8, 4500–4510.
    pub#147 permalink#147
  295. Valentine, S. J.; Clemmer, D. E. Protein oligomers frozen in time. Nature Chemistry 2009, 1, 257–258.
    pub#146 permalink#146
  296. Valentine, S. J.; Clemmer, D. E. Treatise on the Measurement of Molecular Masses with Ion Mobility Spectrometry. Anal. Chem. 2009, 81, 5876–5880.
    pub#145 permalink#145
  297. Trimpin, S.; Tan, B.; Bohrer, B. C.; O’Dell, D. K.; Merenbloom, S. I.; Pazos, M. X.; Clemmer, D. E.; Walker, J. M. Profiling of Phospholipids and Related Lipid Structures using Multidimensional Ion Mobility Spectrometry–Mass Spectrometry. Int. J. Mass Spectrom. 2009, 287, 58–69.
    pub#144 permalink#144
  298. Valentine, S. J.; Kurulugama, R. T.; Bohrer, B. C.; Merenbloom, S. I.; Sowell, R. A.; Mechref, Y; Clemmer, D. E. Developing IMS–IMS–MS for rapid characterization of abundant proteins in human plasma. Int. J. Mass Spectrom. 2009 283, 149–160.
    pub#143 permalink#143
  299. Merenbloom, S. I.; Glaskin, R. S.; Henson, Z. B.; Clemmer, D. E. High-Resolution Ion Cyclotron Mobility Spectrometry. Anal. Chem. 2009, 81, 1482–1487.
    pub#142 permalink#142
  300. Valentine, S. J.; Stokes, S. T.; Kurulugama, R.; Nachtigall, F. M.; Clemmer, D. E. Overtone Mobility Spectrometry (Part 2): Theoretical Considerations of Resolving Power. J. Am. Soc. Mass Spectrom. 2009, 20, 738–750.
    pub#141 permalink#141
  301. Kurulugama, R., Nachtigall, F. M., Lee, S., Valentine, S. J., Clemmer, D. E. Overtone Mobility Spectrometry (Part 1): Experimental Observations. J. Am. Soc. Mass Spectrom. 2009, 20, 729–737.
    pub#140 permalink#140
  302. 2008


  303. Xun, Z.; Kaufman, T. C.; Clemmer, D. E. Proteome response to the panneural expression of human wild-Type α-Synuclein: a Drosophila Model of Parkinson’s Disease. J. Proteome Res. 2008, 7, 3911–3921.
    pub#139 permalink#139
  304. Trimpin, S.; Clemmer, D. E. Ion Mobility Spectrometry/Mass Spectrometry Snapshots for Assessing the Molecular Compositions of Complex Polymeric Systems. Anal. Chem., 2008, 80, 9073–9083.
    pub#138 permalink#138
  305. Plasencia, M. D.; Isailovic, D.; Merenbloom, S. I.; Mechref, Y.; Clemmer, D. E. Resolving and Assigning N-linked Glycan Structural Isomers from Ovalbumin by IMS–MS. J. Am. Soc. Mass Spectrom. 2008, 19, 1706–1715.
    pub#137 permalink#137
  306. Kurulugama, R. T.; Valentine, S. J.; Sowell, R. A.; Clemmer, D. E. Development of a high-throughput IMS–IMS–MS approach for analyzing mixtures of biomolecules. J. Proteomics, 2008, 71, 318–331.
    pub#136 permalink#136
  307. Xun, Z.; Sowell, R. A.; Kaufman, T. C.; Clemmer, D. E. Quantitative Proteomics of a Presymptomatic A53T α-Synuclein Drosophila Model of Parkinson Disease. Mol. Cell. Proteomics, 2008, 7, 1191–1203.
    pub#135 permalink#135
  308. Alves, P.; Arnold, R. J.; Clemmer, D. E.; Li, Y.; Reilly, J. P.; Sheng, Q.; Tang, H.; Xun, Z.; Zeng, R.; Radivojac, P. Fast and accurate identification of semi-tryptic peptides in shotgun proteomics. Bioinformatics 2008, 24, 102–109.
    pub#134 permalink#134
  309. Merenbloom, S. I.; Koeniger, S. L.; Bohrer, B. C.; Valentine, S. J.; Clemmer, D. E. Improving the Efficiency of IMS–IMS by a Combing Technique. Anal. Chem. 2008, 80, 1918–1927.
    pub#133 permalink#133
  310. Polfer, N. C.; Bohrer, B. C.; Plasencia, M. D.; Paizs, B.; Clemmer, D. E. On the dynamics of primary structure scrambling in collision-induced dissociation of peptides. J. Phys Chem. A 2008, 112, 1286–1293.
    pub#132 permalink#132
  311. Isailovic, D.; Kurulugama, R. T.; Plasencia, M. D.; Stokes, S. T.; Kyselova, Z.; Goldman, R.; Mechref, Y.; Novotny, M. V.; Clemmer, D. E. Profiling of Human Serum Glycans Associated with Liver Cancer and Cirrhosis by IMS–MS. J. Proteome Res. 2008, 7, 1109–1117.
    pub#131 permalink#131
  312. Bohrer, B. C.; Merenbloom, S. I.; Koeniger, S. L.; Hilderbrand, A. E.; Clemmer, D. E. Biomolecule Analysis by Ion Mobility Spectrometry, Annu. Rev. Anal. Chem., 2008, 1, 293–327.
    pub#130 permalink#130
  313. 2007


  314. PATENT Clemmer, D. E.; Koeniger, S.; Valentine, S. Ion mobility spectrometer . US Pattent Office. 2007. US20070114382A1
  315. pub#272 permalink#272
  316. Trimpin, S.; Clemmer, D. E.; McEwen, C. N. Charge-remote fragmentation of lithiated fatty acids on a TOF–TOF instrument J. Am. Soc. Mass. Spectrom. 2007, 18, 1967–1972.
    pub#129 permalink#129
  317. Sowell, R. A.; Hersberger, K. E.; Kaufman, T. C.; Clemmer, D. E. Examining the Proteome of Drosophila across Organism Lifespan J. Proteome Res. 2007, 6, 3637–3647.
    pub#128 permalink#128
  318. Xun, Z.; Sowell, R. A.; Kaufman, T. C.; Clemmer, D. E. Lifetime Proteomic Profiling of an A30P α-synuclein Drosophila Model of Parkinson's Disease J. Proteome Res. 2007, 6, 3729–3738.
    pub#127 permalink#127
  319. Liu, X.; Miller, B. R.; Rebec, G. V.; Clemmer, D. E. Protein Expression in the Striatum and Cortex Regions of the Brain for a Mouse Model of Huntington's Disease J. Proteome Res. 2007, 6, 3134–3142.
    pub#126 permalink#126
  320. Liu, X.; Valentine, S. J.; Plasencia, M. D.; Trimpin, S.; Naylor, S.; Clemmer, D. E. Mapping the Human Plasma Proteome by SCX–LC–IMS–MS. J. Am. Soc. Mass Spectrom. 2007, 18, 1249–1264. [Cover Image]
    pub#125 permalink#125
  321. Trimpin, S.; Plasencia, M.; Isailovic, D.; Clemmer, D. E. Resolving Oligomers from Fully Grown Polymers with IMS–MS, Anal. Chem. 2007, 79, 7965–7974.
    pub#124 permalink#124
  322. Xun, Z.; Sowell, R. A.; Kaufman, T. C.; Clemmer, D. E. Protein Expression in a Drosophila Model of Parkinson's Disease, J. Proteome Research 2007, 6, 348–357.
    pub#123 permalink#123
  323. Merenbloom, S. I.; Bohrer, B. C.; Koeniger, S. L.; Clemmer, D. E. Assessing the Peak Capacity of IMS–IMS Separations of Tryptic Peptide Ions in 300 K He, Anal. Chem. 2007, 79, 515–522. [Cover Image]
    pub#122 permalink#122
  324. Koeniger, S. L.; Clemmer, D. E.Resolution and Structural Transitions of Elongated States of Ubiquitin. J. Am. Soc. Mass Spectrom. 2007, 18, 322–331.
    pub#121 permalink#121
  325. 2006


  326. PATENT Clemmer, D. E. Instrument for separating ions in time as functions of preselected ion mobility and ion mass . US Pattent Office. 2006. US7077944B2
  327. pub#272 permalink#272
  328. Myung, S.; Lorton, P.; Merenbloom, S. I.; Fioroni, M.; Koeniger, S. L.; Julian, R. R.; Baik, M-H.; Clemmer, D. E. Evidence for Spontaneous Resolution of Icosahedral Proline. J. Am. Chem. Soc. 2006 128, 15988–15989.
    pub#120 permalink#120
  329. Valentine, S. J.; Plasencia, M. D.; Liu, X.; Krishnan, M.; Naylor, S.; Udseth, H. R.; Smith, R. D.; Clemmer, D. E.Toward Plasma Proteome Profiling with Ion Mobility–Mass Spectrometry, J. Proteome Research 2006, 5, 2977–2984.
    pub#119 permalink#119
  330. Myung, S.; Fioroni, M.; Julian, R. R.; Koeniger, S. L.; Baik, M-H.; Clemmer, D. E. Chirally Directed Formation of Nanometer-Scale Proline Clusters, J. Am. Chem. Soc. 2006, 128, 10833–10839.
    pub#118 permalink#118
  331. Koeniger, S. L.; Merenbloom, S. I.; Sevugarajan, S.; Clemmer, D. E. Transfer of Structural Elements from Compact to Extended States in Unsolvated Ubiquitin, J. Am. Chem. Soc. 2006, 128, 11713–11719.
    pub#117 permalink#117
  332. Hilderbrand, A. E.; Myung, S.; Clemmer, D. E. Exploring Crown Ethers as Shift Reagents for Ion Mobility Spectrometry, Anal. Chem. 2006, 78, 6792–6800.
    pub#116 permalink#116
  333. Tang, H.; Arnold, R. J.; Alves, P.; Xun, Z.; Clemmer, D. E.; Novotny, M. V.; Reilly, J. P.; Radivojac, P. A Computational Approach Toward Label-free Protein Quantification using Predicted Peptide Detectability, Bioinformatics 2006, 22, 481–488.
    pub#115 permalink#115
  334. Valentine, S. J.; Sevugarajan, S.; Kurulugama, R. T.; Koeniger, S. L.; Merenbloom, S. I.; Bohrer, B. C.; Clemmer, D. E.Split-Field Drift Tube/Mass Spectrometry and Isotopic Labeling Techniques for Determination of Single Amino Acid Polymorphisms, J. Proteome Research 2006, 5, 1879–1887.
    pub#114 permalink#114
  335. Koeniger, S. L.; Merenbloom, S. I.; Valentine, S. J.; Jarrold, M. F.; Udseth, H.; Smith, R.; Clemmer, D. E. An IMS–IMS Analogue of MS–MS, Anal. Chem. 2006, 78, 4161–4174.
    pub#113 permalink#113
  336. Myung, S.; Valentine, S. J.; Clemmer, D. E. Ion–Mobility Spectrometry Combined with Mass Spectrometry: Principles and Applications in Protein Characterization in Encyclopedia of Mass Spectrometry (Hyphenated Methods , Volume 8), Gross, M. L.; Caprioli, R. and Niessen, W. M. A., Eds.; Elsevier: Kidlington, Oxford, 2006.
    permalink#112
  337. Merenbloom, S. I.; Koeniger, S. L.; Valentine, S. J.; Plasencia, M. D.; Clemmer, D. E. IMS–IMS and IMS–IMS–IMS/MS for Separating Peptide and Protein Fragment Ions, Anal. Chem. 2006, 78, 2802–2809.
    pub#111 permalink#111
  338. Koeniger, S. L.; Merenbloom, S. I.; Clemmer, D. E. Evidence for Many Resolvable Structures within Conformation Types of Electrosprayed Ubiquitin Ions, J. Phys. Chem B 2006, 110, 7017–7021.
    pub#110 permalink#110
  339. Myung, S.; Wiseman, J. M.; Valentine, S. J.; Zolt�n, T. Cooks, R. G.; Clemmer, D. E. Coupling Desorption Electrospray Ionization (DESI) with Ion Mobility/Mass Spectrometry for Analysis of Protein Structure: Evidence for Desorption of Folded and Denatured States, J. Phys. Chem B 2006, 110, 5045–5051.
    pub#109 permalink#109
  340. 2005


  341. PATENT Clemmer, D. E. Instrument for separating ions in time as functions of preselected ion mobility and ion mass. US Pattent Office. 2005. US6960761B2
  342. pub#272 permalink#272
  343. Badman, E.; Myung, S.; Clemmer. D. E. Evidence for Unfolding and Refolding of Gas Phase Cyctrochrome c Ions in a Paul Trap, J. Am. Soc. Mass Spectrom. 2005, 16, 1493–1497.
    pub#108 permalink#108
  344. Taraszka, J. A.; Gao, X.; Valentine, S. J.; Sowell, R. A.; Koeniger, S. L; Miller, D. F.; Kaufman, T. C.; Clemmer, D. E. Proteome Profiling for Assessing Diversity: Analysis of Individual Heads of Drosophila melanogaster Using LC–Ion Mobility–MS, J. Proteome Research 2005, 4, 1238–1247.
    pub#107 permalink#107
  345. Taraszka, J. A.; Kurulugama, R.; Sowell, R.; Valentine, S. J.; Koeniger, S. L; Arnold, R. J.; Miller, D. F.; Kaufman, T. C.; Clemmer, D. E. Mapping the Proteome of Drosophila melanogaster: Analysis of Embryos and Adult Heads by LC–IMS–MS Methods, J. Proteome Research 2005, 4, 1223–1237.
    pub#106 permalink#106
  346. Valentine, S. J.; Liu, X.; Plasencia, M. D.; Hilderbrand, A. E.; Kurulugama, R. T.; Koeniger, S. L.; Clemmer, D. E. Developing liquid chromatography ion mobility mass spectrometry techniques, Expert Rev. Proteomics 2005, 2, 553–565.
    pub#105 permalink#105
  347. Myung, S.; Pink, M.; Baik, M.; Clemmer, D. E. DL–Proline, Acta Cryst. 2005, C61, 506–508.
    pub#104 permalink#104
  348. Wong, R. L.; Counterman, A. E.; Clemmer, D. E.; Williams, E. R. Evaluation of Ion Mobility Spectroscopy for Determining Charge-Solvated versus Salt-Bridge Structures of Protonated Trimers, J. Am. Soc. Mass Spectrom. 2005, 16, 1009–1019.
    pub#103 permalink#103
  349. Hilderbrand, A. E.; Clemmer, D. E. Determination of Sequence-Specific Intrinsic Size Parameters from Cross Sections for 162 Tripeptides J. Phys. Chem B 2005, 109, 11802–11809.
    pub#102 permalink#102
  350. Julian, R. R.; Myung, S.; Clemmer, D. E. Do Homochiral Aggregates Have an Entropic Advantage? J. Phys. Chem. B 2005, 109, 440–444.
    pub#101 permalink#101
  351. Koeniger, S. L.; Valentine, S. J.; Myung, S.; Plasencia, M.; Lee, Y. L.; Clemmer, D. E. Development of Field Modulation in a Split-Field Drift Tube for High-Throughput Multi-dimensional Separations, J. Proteome Research 2005, 4, 25–35.
    pub#100 permalink#100
  352. 2004


  353. Liu, X.; Plasencia, M.; Ragg, S.; Valentine, S. J.; Clemmer, D. E. Development of High-Throughput Dispersive LC–Ion Mobility–TOFMS Techniques for Analyzing the Human Plasma Proteome, Brief Funct. Genomic Proteomic 2004, 3, 177–186.
    pub#99 permalink#99
  354. Nanita, S. C.; Takats, Z.; Myung, S.; Clemmer, D. E.; Cooks, R. G. Chiral Enrichment in Serine via Formation, Dissociation and Soft-Landing of Octameric Cluster Ions, J. Am. Soc. Mass Spectrom. 2004, 15, 1360–1365.
    pub#98 permalink#98
  355. Sowell, R. A.; Koeniger, S. L.; Valentine, S. J.; Moon, M. H.; Clemmer, D. E. Nanoflow LC/IMS–MS (and –CID/MS) of Protein Mixtures, J. Am. Soc. Mass Spectrom. 2004,15, 1341–1353.
    pub#97 permalink#97
  356. Myung, S.; Julian, R. R.; Nantia, S. C.; Cooks, R. G.; Clemmer, D. E. Formation of Nanometer Scale Serine Clusters by Sonic Spray, J. Phys. Chem B 2004, 108, 6105–6111.
    pub#96 permalink#96
  357. Julian, R. R.; Myung, S.; Clemmer, D. E. Spontaneous Anti-Resolution in Heterochiral Clusters of Serine,J. Am. Chem. Soc. 2004, 126, 4110–4111.
    pub#95 permalink#95
  358. Counterman, A. E.; Clemmer, D. E. Anhydrous Polyproline Helices and Globules, J. Phys. Chem. B 2004, 108, 4885–4898.
    pub#94 permalink#94
  359. 2003


  360. Srebalus-Barnes, C. A.; Clemmer, D. E. Ion Mobility/Time-of-Flight Analysis of Combinatorial Library Mixtures in High Throughput Analysis: A Tool for Combinatorial Materials Science; Potyrailo, R. A. and Amis, E. J., Eds.; Kluwer Academic/Plenum Publishers: New York, NY, 2003, p. 187–216.
    permalink#93
  361. Hilderbrand, A. E.; Myung, S.; Srebalus Barnes, C. A.; Clemmer, D. E. Development of LC–IMS–CID–TOFMS Techniques: Analysis of a 256 Component Tetrapeptide Combinatorial Library, J. Am. Soc. Mass Spectrom. 2003, 14, 1424–1436.
    pub#92 permalink#92
  362. Srebalus-Barnes, C. A.; Clemmer, D. E. Assessing Intrinsic Side Chain Interactions Between i and i+4 Residues in Solvent-Free Peptides: A Combinatorial Gas-Phase Approach, J. Phys. Chem. A 2003, 107, 10566–10579. [invited for special issue honoring Charlie Parmenter]
    pub#91 permalink#91
  363. Moon, M. H.; Myung, S.; Plasencia, M.; Hilderbrand, A. E.; Clemmer, D. E. Nanoflow LC/Ion Mobility/CID/TOF for Proteomics: Analysis of a Human Urinary Proteome, J. Proteome Research 2003, 2, 589–597.
    pub#90 permalink#90
  364. Valentine, S. J.; Koeniger, S. L.; Clemmer, D. E. A Split-field Drift Tube for Separation and Efficient Fragmentation of Biomolecular Ions, Anal. Chem. 2003, 75, 6202–6208.
    pub#89 permalink#89
  365. Myung, S.; Lee, Y. J.; Moon, M. H.; Taraszka, J. A.; Sowell, R.; Koeniger, S. L.; Hilderbrand, A. E.; Valentine, S. J.; Cherbas, L.; Cherbas, P.; Kaufmann, T. C.; Miller, D. F.; Mechref, Y.; Novotny, M. V.; Ewing, M. A.; Clemmer D. E. Development of High-Sensitivity Ion Trap–IMS–TOF Techniques: A High-Throughput Nano–LC/IMS/TOF Separation of the Drosophila Fly Proteome, Anal. Chem. 2003, 75, 5137–5145.
    pub#88 permalink#88
  366. Hilderbrand, A. E.; Valentine, S. J.; Clemmer, D. E. Mobilities: Biological Systems and Clusters in Encyclopedia of Mass Spectrometry Volume 1: Theory and Ion Chemistry; Gross, M. L.; Caprioli, R. and Armentrout, P., Eds.; Elsevier: Kidlington, Oxford, 2003, p.506–520.
    permalink#87
  367. Que, A. H.; Mechref, Y.; Huang, Y.; Taraszka, J. A.; Clemmer, D. E.; Novotny, M. V. Coupling Capillary Electrochromatogarphy with Fourier-Transform Mass Spectrometry for Characterizing Complex Oligosaccharide Pools, Anal. Chem. 2003, 75, 1684–1690.
    pub#86 permalink#86
  368. Counterman, A. E.; Clemmer, D. E. Compact → Extended Helix Transitions of Polyalanine in Vacuo, J. Phys. Chem. B 2003, 107, 2111–2117.
    pub#85 permalink#85
  369. Counterman, A. E.; Thompson, M. S.; Clemmer, D. E. Identifying a protein by MALDI–TOF Mass Spectrometry: An Experiment for the Undergraduate Laboratory, J. of Chem. Edu. 2003, 80, 177–180.
    pub#84 permalink#84
  370. 2002


  371. PATENT Clemmer, D. E. Ion Separation Instrument. US Pattent Office. 2002. US6498342B1
  372. pub#272 permalink#272
  373. Lee, Y. J.; Hoaglund-Hyzer, C. S.; Srebalus Barnes, C. A.; Hilderbrand, A. E.; Valentine, S. J.; Clemmer, D. E. Development of High-Throughput LC–injected Ion Mobility–Q–TOF Techniques for Analysis of Complex Peptide Mixtures, J. Chromatography B 2002, 782, 343–351. [Invited for the special Proteomics issue]
    pub#83 permalink#83
  374. Counterman, A. E.; Clemmer, D. E. Gas Phase Polyalanine: Assessment of ii+3 and ii+4 Helical Turns in [Alan+4H]4+ (n = 29–49) Ion, J. Phys. Chem. B 2002, 106, 12045–12051.
    pub#82 permalink#82
  375. Myung, S.; Badman, E.; Lee, Y. J.; Clemmer, D. E. Structural Transitions of Electrosprayed Ubiquitin Ions Stored in an Ion Trap over ~10 ms to 30s, J. Phys. Chem. A 2002, 106, 9976–9982. [A special issue to celebrate Jack Beauchamp's 60th birthday]
    pub#81 permalink#81
  376. Badman, E.; Myung, S.; Clemmer, D. E. Gas-Phase Separations of Protein and Peptide Ion Fragments Generated by Collision-Induced Dissociation in an Ion Trap, Anal. Chem. 2002, 74, 4889–4894.
    pub#80 permalink#80
  377. Badman, E. R.; Hoaglund-Hyzer, C. S.; Clemmer, D. E. Dissociation of Different Conformations of Ubiquitin Ions, J. Am. Soc. Mass Spectrom. 2002, 13, 719–723.
    pub#79 permalink#79
  378. Valentine, S. J.; Clemmer, D. E. Temperature Dependent H/D Exchange of Compact and Elongated Cytochrome c Ions in the Gas Phase, J. Am. Soc. Mass Spectrom. 2002, 13, 506–517.
    pub#78 permalink#78
  379. Counterman, A. E.; Clemmer, D. E. Cis–Trans Signatures of Proline-Containing Tryptic Peptides in the Gas Phase, Anal. Chem. 2002, 74, 1946–1951.
    pub#77 permalink#77
  380. Leavell, M. D.; Gaucher, S. P.; Leary, J. A.; Taraszka, J. A.; Clemmer, D. E. Conformational Studies of Zn-Ligand-Hexose Diastereomers Using Ion Mobility Measurements and Density Functional Theory Calculations, J. Am. Soc. Mass Spectrom. 2002, 13, 284–293.
    pub#76 permalink#76
  381. Mosier, P. D.; Counterman, A. E.; Jurs, P. C.; Clemmer, D. E. Prediction of Peptide Ion Collision Cross Sections from Topological Molecular Structure and Amino Acid Parameters, Anal. Chem. 2002, 74, 1360–1370.
    pub#75 permalink#75
  382. Hoaglund-Hyzer, C. S.; Lee, Y. J.; Counterman, A. E.; Clemmer, D. E. Coupling Ion Mobility Separations, Collisional Activation Techniques, and Multiple Stages of MS for Analysis of Complex Peptide Mixtures, Anal. Chem. 2002, 74, 992–1006.
    pub#74 permalink#74
  383. Kindy, J. M.; Taraszka, J. A.; Regnier, F. E.; Clemmer, D. E. Quantifying Peptides in Isotopically Labeled Protease Digests by Ion Mobility/Time-of-Flight Mass Spectrometry, Anal. Chem. 2002, 74, 950–958.
    pub#73 permalink#73
  384. Srebalus Barnes, C. A.; Hilderbrand, A. E.; Valentine, S. J.; Clemmer, D. E. Resolving Isomeric Peptide Mixtures: A Combined HPLC/Ion Mobility–TOFMS Analysis of a 4000-Component Combinatorial Library, Anal. Chem. 2002, 74, 26–36.
    pub#72 permalink#72
  385. 2001


  386. PATENT Clemmer, D. E.; Reilly, J. P. Ion mobility and mass spetrometer. US Pattent Office. 2001. US6323482B1
  387. pub#272 permalink#272
  388. Valentine, S. J.; Kulchania, M.; Srebalus Barnes, C. A.; Clemmer, D. E. Multidimensional separations of complex peptide mixtures: a combined high-performance liquid chromatography/ion mobility/time-of-flight mass spectrometry approach, Int. J. Mass Spectrom. 2001, 212, 97–109. [A special issue celebrating R. Graham Cooks' 60th birthday]
    pub#71 permalink#71
  389. Badman, E. R.; Hoaglund-Hyzer, C. S.; Clemmer, D. E. Monitoring Structural Changes of Proteins in an Ion Trap over ~10–200 ms: Unfolding Transitions in Cytochrome c Ions, Anal. Chem. 2001, 73, 6000–6007.
    pub#70 permalink#70
  390. Counterman, A. E.; Clemmer, D. E. Magic Number Clusters of Serine in the Gas Phase, J. Phys. Chem. B 2001, 105, 8092–8096.
    pub#69 permalink#69
  391. Lee, Y. J.; Hoaglund-Hyzer, C. S.; Taraszka, J. A.; Zientara, G. A.; Counterman, A. E.; Clemmer, D. E. Collision-Induced Dissociation of Mobility-Separated Ions Using an Orifice-Skimmer Cone at the Back of a Drift Tube, Anal. Chem. 2001, 73, 3549–3555.
    pub#68 permalink#68
  392. Counterman, A. E.; Hilderbrand, A. E.; Srebalus Barnes, C. A.; Clemmer, D. E. Formation of Peptide Aggregates during ESI: Size, Charge, Composition, and Contributions to Noise, J. Am. Soc. Mass Spectrom. 2001, 12, 1020–1035.
    pub#67 permalink#67
  393. Shvartsburg, A. A.; Siu, K. W. M.; Clemmer, D. E. Prediction of Peptide Ion Mobilities via a priori Calculations from Intrinsic Size Parameters of Amino Acid Residues, J. Am. Soc. Mass Spectrom. 2001, 12, 885–888.
    pub#66 permalink#66
  394. Johannessen, S. C.; Brisbois, R. G.; Fischer, J. P.; Grieco, P. A.; Counterman, A. E.; Clemmer, D. E. A Nano-Scale Barrel and Cube: Transition Metal-Mediated Self-Assembly of CpCoCb-Derived Ligand Scaffolds, J. Am. Chem. Soc. 2001, 123, 3818–3819.
    pub#65 permalink#65
  395. Ideue, S.; Sakamoto, K.; Honma, K.; Clemmer, D. E. Conformational change of electrosprayed cytochrome-c studied by laser-induced fluorescence, Chem. Phys. Lett. 2001, 337, 79–84.
    pub#64 permalink#64
  396. Taraszka, J. A.; Counterman, A. E.; Clemmer, D. E. Gas–Phase separations of complex tryptic peptide mixtures, Fresenius J. Anal. Chem., 2001, 369, 234–245.
    pub#63 permalink#63
  397. Counterman, A. E.; Clemmer, D. E.; Large Anhydrous Polyalanine Ions: Evidence for Extended Helices and Onset of a More Compact State, J. Am. Chem. Soc., 2001, 123, 1490–1498.
    pub#62 permalink#62
  398. Taraszka, J. A.; Counterman, A. E.; Clemmer, D. E.; Large anhydrous polyalanine ions: substitution of Na+ for H+ destabilizes folded states, Int. J. Mass Spectrom., 2001, 204, 87–100.
    pub#61 permalink#61
  399. Srebalus-Barnes, C. A.; Clemmer, D. E. Assessment of Purity and Screening of Peptide Libraries by Nested Ion Mobility–TOFMS: Identification of RNase S-protein Binders, Anal. Chem. 2001, 73, 424–433.
    pub#60 permalink#60
  400. Hoaglund-Hyzer, C. S.; Clemmer, D. E. Ion Trap/Ion Mobility/Quadrupole/Time-of-Flight Mass Spectrometry for Peptide Mixture Analysis, Anal. Chem. 2001, 73, 177–184.
    pub#59 permalink#59
  401. 2000


  402. PATENT Sporleder, C. R.; Clemmer, D. E. Electric field generation for charged particle analyzers. US Pattent Office. 2000. US6040573A
  403. pub#272 permalink#272
  404. Hoaglund-Hyzer, C. S.; Li, J.; Clemmer, D. E. Mobility Labeling for Parallel CID of Ion Mixtures, Anal. Chem. 2000, 72, 2737–2740.
    pub#58 permalink#58
  405. Taraszka, J. A.; Li, J.; Clemmer, D. E. Metal-Mediated Peptide Ion Conformations in the Gas Phase, J. Phys. Chem. B 2000, 104, 4545–4551.
    pub#57 permalink#57
  406. Srebalus, C. A.; Li, J.; Marshall, W. S.; Clemmer, D. E. Determining Synthetic Failures in Combinatorial Libraries by Hybrid Gas-Phase Separation Methods, J. Am. Soc. Mass Spectrom. 2000, 11, 352–355.
    pub#56 permalink#56
  407. 1999


  408. PATENT Clemmer, D. E.; Reilly, J. P. Hybrid ion mobility and mass spectrometer. US Pattent Office. 1999. US5905258A
  409. pub#272 permalink#272
  410. Valentine, S. J.; Counterman, A. E.; Clemmer, D. E. A Database of 660 Peptide Ion Cross Sections: Use of Intrinsic Size Parameters for Bona Fide Predictions of Cross Sections, J. Am. Soc. Mass Spectrom. 1999, 10, 1188–1211.
    pub#55 permalink#55
  411. Hoaglund-Hyzer, C. S.; Counterman, A. E.; Clemmer, D. E. Anhydrous Protein Ions, Chem. Rev. 1999, 99, 3037–3079.
    pub#54 permalink#54
  412. Henderson, S. C.; Li, J.; Counterman, A. E.; Clemmer, D. E. Intrinsic Size Parameters for Val, Ile, Leu, Gln, Thr, Phe, and Trp Residues from Ion Mobility Measurements of Polyamino Acid Ions, J. Phys. Chem. B 1999, 103, 8780–8785.
    pub#53 permalink#53
  413. Srebalus, C. A.; Li, J.; Marshall, W. S.; Clemmer, D. E. Gas-Phase Separations of Electrosprayed Peptide Libraries, Anal. Chem. 1999, 71, 3918–3927.
    pub#52 permalink#52
  414. Counterman, A. E.; Clemmer, D. E. Volumes of Individual Amino Acid Residues in Gas-Phase Peptide Ions, J. Am. Chem. Soc. 1999, 121, 4031–4039.
    pub#51 permalink#51
  415. Valentine, S. J.; Counterman, A. E.; Hoaglund-Hyzer, C. S.; Clemmer, D. E. Intrinsic Amino Acid Size Parameters from a Series of 113 Lysine-Terminated Tryptic Digest Peptide Ions, J. Phys. Chem. B 1999, 103, 1203–1207.
    pub#50 permalink#50
  416. Henderson, S. C.; Valentine, S. J.; Counterman, A. E.; Clemmer, D. E. ESI/Ion Trap/Ion Mobility/Time-of-Flight Mass Spectrometry for Rapid and Sensitive Analysis of Biomolecular Mixtures, Anal. Chem. 1999, 71, 291–301.
    pub#49 permalink#49
  417. 1998


  418. Valentine, S. J.; Counterman, A. E.; Hoaglund, C. S.; Reilly, J. P.; Clemmer, D. E. Gas-Phase Separations of Protease Digests, J. Am. Soc. Mass Spectrom. 1998, 9, 1213–1216.
    pub#48 permalink#48
  419. Li, J.; Taraszka, J. A.; Counterman, A. E.; Clemmer, D. E. Influence of solvent composition and capillary temperature on the conformations of electrosprayed ions: unfolding of compact ubiquitin conformers from pseudonative and denatured solutions, Int. J. Mass. Spectrom. 1999, 185/186/187, 37–47.
    pub#47 permalink#47
  420. Hoaglund, C. S.; Valentine, S. J.; Sporleder, C. R.; Reilly, J. P.; Clemmer, D. E. Three-Dimensional Ion Mobility/TOFMS Analysis of Electrosprayed Biomolecules, Anal. Chem. 1998, 70, 2236–2242.
    pub#46 permalink#46
  421. Counterman, A. E.; Valentine, S. J.; Srebalus, C. A.; Henderson, S. C.; Hoaglund, C. S.; Clemmer, D. E. High-Order Structure and Dissociation of Gaseous Peptide Aggregates that are Hidden in Mass Spectra, J. Am. Soc. Mass Spectrom. 1998, 9, 743–759.
    pub#45 permalink#45
  422. 1997


  423. Schroder, D.; Schwartz, H.; Clemmer, D. E.; Chen, Y.; Armentrout, P. B.; Baranov, V. I.; Bohme, D. K. Activation of Hydrogen and Methane by Thermalized FeO+ in the Gas Phase as Studied by Multiple Mass Spectrometric Techniques, Int. J. Mass Spectrom. Ion Proc. 1997, 161, 175–191.
    pub#44 permalink#44
  424. Hoaglund, C. S.; Valentine, S. J.; Clemmer, D. E. An Ion Trap Interface for ESI–Ion Mobility Experiments, Anal. Chem. 1997, 69, 4156–4161.
    pub#43 permalink#43
  425. Liu, Y.; Valentine, S. J.; Counterman, A. E.; Hoaglund, C. S.; Clemmer, D. E. Injected–ion Mobility Analysis of Biomolecules, Anal. Chem. 1997, 69, 728A.
    pub#42 permalink#42
  426. Hoaglund, C. S.; Liu, Y.; Ellington, A. D.; Pagel, M.; Clemmer, D. E. Gas-Phase DNA: Oligothymidine Ion Conformers, J. Am. Chem. Soc. 1997, 119, 9051–9052.
    pub#41 permalink#41
  427. Liu, Y.; Clemmer, D. E. Characterizing Oligosaccharides Using Injected–Ion Mobility/Mass Spectrometry, Anal. Chem. 1997, 69, 2504–2509.
    pub#40 permalink#40
  428. Clemmer, D. E.; Jarrold, M. F. Ion Mobility Measurements and their Applications to Clusters and Biomolecules, J. Mass Spectrom. 1997, 32, 577–592.
    pub#39 permalink#39

  429. Valentine, S. J.; Counterman, A. E.; Clemmer, D. E. Conformer-Dependent Proton-Transfer Reactions of Ubiquitin Ions, J. Am. Soc. Mass Spectrom. 1997, 8, 954–961.
    pub#38 permalink#38
  430. Valentine, S. J.; Anderson, J. G.; Ellington, A. D.; Clemmer, D. E. Disulfide–Intact and –Reduced Lysozyme in the Gas Phase: Conformations and Pathways of Folding and Unfolding, J. Phys. Chem. B 1997, 101, 3891–3900.
    pub#37 permalink#37
  431. Valentine, S. J.; Clemmer, D. E. H/D Exchange Levels of Shape-Resolved Cytochrome c Conformers in the Gas Phase, J. Am. Chem. Soc. 1997, 119, 3558–3566.
    pub#36 permalink#36
  432. Dugourd, P.; Hudgins, R. R.; Clemmer, D. E.; Jarrold, M. F. High-resolution ion mobility measurements, Rev. Sci. Instrum. 1997, 68, 1122–1129.
    pub#35 permalink#35
  433. Shelimov, K. B.; Clemmer, D. E.; Hudgins, R. R.; Jarrold, M. F. Protein Structure in Vacuo: The Gas Phase Conformations of BPTI and Cytochrome c. J. Am. Chem. Soc. 1997 119, 2240–2248.
    pub#34 permalink#34
  434. 1996


  435. Shelimov, K. B.; Clemmer, D. E.; Jarrold, M. F. Metal Containing Carbon Clusters, J. Chem. Soc. Dalton Trans. 1996, 567–574.
    pub#33 permalink#33
  436. Shelimov, K. B.; Clemmer, D. E.; Hunter, J. M.; Jarrold, M. F. Ion Mobility Studies of the Structures and Isomerization of Gas Phase Carbon and Metal Containing Carbon Clusters, in The Chemical Physics of Fullerenes 10 (and 5) Years Later; NATO–ASI Series E, (Kluwer, Dordrecht, 1996) p. 71–87.
  437. 1995


  438. Clemmer, D. E.; Hudgins, R. R.; Jarrold, M. F. Naked Protein Conformations: Cytochrome c in the Gas Phase, J. Am. Chem. Soc. 1995, 117, 10141–10142.
    pub#31 permalink#31
  439. Shelimov, K. B.; Clemmer, D. E.; Jarrold, M. F. Drift Tube Studies of Metallofullerenes, in Recent Advances in the Chemistry and Physics of Fullerenes and Related Materials (Proceedings of The Electrochemical Society Vol. 95–10), R. S. Ruoff and K. M. Kadish, Eds., (The Electrochemical Society, Pennington, NJ, 1995) p. 1437–1447.
  440. Shelimov, K. B.; Clemmer, D. E.; Jarrold, M. F. Structures and Isomerization of LaCn+ Clusters, J. Phys. Chem. 1995, 99, 11376–11386.
    pub#29 permalink#29
  441. Clemmer, D. E.; Jarrold, M. F. Metal-Containing Carbon Clusters: Structures, Isomerization, and Formation of NbCn+ Clusters, J. Am. Chem. Soc. 1995, 117, 8841–8850.
    pub#28 permalink#28
  442. 1994


  443. Clemmer, D. E.; Hunter, J. M.; Shelimov, K. B.; Jarrold, M. F. Physical and Chemical Evidence for Metallofullerenes with Metal Atoms as Part of the Cage, Nature 1994, 372, 248–250.
    pub#27 permalink#27
  444. Chen, Y. M.; Clemmer, D. E.; Armentrout, P. B. Kinetic and Electronic Energy Dependence of the Reactions of Sc+ and Ti+ with D2O, J. Phys. Chem. 1994, 98, 11490–11498.
    pub#26 permalink#26
  445. Shelimov, K. B.; Clemmer, D. E.; Jarrold, M. F. Structures and Formation of Small LaCn+ Metallofullerenes, J. Phys. Chem. 1994, 98, 12819–12821.
    pub#25 permalink#25
  446. Honma, K.; Nakamura, M.; Clemmer, D. E.; Koyano, I. Kinetics of Ti(a3F, a5F) and V(a4F, a6D) Depletion by NH3 and H2S, J. Phys. Chem. 1994, 98, 13286–13293.
    pub#24
  447. Honma, K.; Clemmer, D. E. The Importance of the Electron Transfer Mechanism in Reactions of Neutral Transition Metal Atoms, Laser Chem. 1994, 15, 209–220.
    pub#23 permalink#23
  448. Chen, Y. M.; Clemmer, D. E.; Armentrout, P. B. Conversion of CH4 to CH3OH: Reactions of CoO+ with CH4 and D2, Co+ with CH3OD and D2O, and Co+(CH3OD) with Xe, J. Am. Chem. Soc. 1994, 116, 7815–7826.
    pub#22 permalink#22
  449. Clemmer, D. E.; Shelimov, K. B.; Jarrold, M. F. Bonding of Metals to Carbon Rings: LaCn+ Isomers with La+ Inserted and Attached to the Ring, J. Am. Chem. Soc. 1994, 116, 5971–5972.
    pub#21 permalink#21
  450. Clemmer, D. E.; Chen, Y. M.; Khan, F. A.; Armentrout, P. B. State-Specific Reactions of Fe+(a6D, a4F) with D2O and Reactions of FeO+ with D2, J. Phys. Chem. 1994, 98, 6522–6529.
    pub#20 permalink#20
  451. Clemmer, D. E.; Chen, Y. M.; Aristov, N.; Armentrout, P. B. Kinetic and Electronic Energy Dependence of the Reaction V+ with D2O, J. Phys. Chem. 1994, 98, 7538–7544.
    pub#19 permalink#19
  452. Clemmer, D. E.; Jarrold, M. F. Structural Dynamics of Carbon and Metal Containing Carbon Clusters, in Laser Techniques for State-Selected and State-to-State Chemistry II, SPIE Proc. 1994, 2124, 400.
  453. Clemmer, D. E.; Shelimov, K. B.; Jarrold, M. F. Gas-Phase Self-Assembly of Endohedral Metallofullerenes, Nature 1994, 367, 718–720.
    pub#17 permalink#17
  454. 1993


  455. Clemmer, D. E.; Honma, K.; Koyano, I. Kinetics of Excited State Ti(a5F) Depletion by NO, O2, N2O, and N2, J. Phys. Chem. 1993, 97, 11480–11488.
    pub#16 permalink#16
  456. Khan, F. A.; Clemmer, D. E.; Schultz, R. H.; Armentrout, P. B. Sequential Bond Energies of Cr(CO)x+, x = 1–6, J. Phys. Chem. 1993, 97, 7978–7987.
    pub#15 permalink#15
  457. Chen, Y. M.; Clemmer, D. E.; Armentrout, P. B. Gas-phase thermochemistry of VH and CrH, J. Chem. Phys. 1993, 98, 4929–4936.
    pub#14 permalink#14
  458. Clemmer, D. E.; Aristov, N.; Armentrout, P. B. Reactions of ScO+, TiO+, and VO+ with D2: M+–OH Bond Energies and Effects of Spin Conservation, J. Phys. Chem. 1993, 97, 544–552.
    pub#13 permalink#13
  459. 1992


  460. Clemmer, D. E.; Weber, M. E.; Armentrout, P. B. Reactions of Al+(1S) with NO2, N2O and CO2: Thermochemistry of AlO and AlO+, J. Phys. Chem. 1992, 96, 10888–10893.
    pub#12 permalink#12
  461. Clemmer, D. E.; Armentrout, P. B. Direct determination of the adiabatic ionization energy of NO2 as measured by guided ion-beam mass spectrometry, J. Chem. Phys. 1992, 97, 2451–2458.
    pub#11 permalink#11
  462. Armentrout, P. B.; Clemmer, D. E. Guided Ion Beam Studies of the Energetics of Organometallic Species, in Energetics of Organometallic Species, Simoes, J. A. M., Eds.; Kluwer: Netherlands, 1992; pp. 321–356.
    permalink#10
  463. Clemmer, D. E.; Dalleska, N. F.; Armentrout, P. B. Gas-Phase Thermochemistry of the Group 3 Dioxides: ScO2, YO2 and LaO2, Chem. Phys. Lett. 1992, 190, 259–265.
    pub#9 permalink#9
  464. 1991


  465. Clemmer, D. E.; Dalleska, N. F.; Armentrout, P. B. Reaction of Zn+ with NO2. The gas–phase thermochemistry of ZnO, J. Chem. Phys. 1991, 95, 7263–7268.
    pub#8 permalink#8
  466. Clemmer, D. E.; Elkind, J. L.; Aristov, N.; Armentrout, P. B. Reaction of Sc+, Ti+, and V+ with CO. MC+ and MO+ bond energies, J. Chem. Phys. 1991, 95, 3387–3393.
    pub#7 permalink#7
  467. Chen, Y.M.; Clemmer, D. E.; Armentrout, P. B. The gas-phase thermochemistry of TiH, J. Chem. Phys. 1991, 95, 1228–1233.
    pub#6 permalink#6
  468. Clemmer, D. E.; Armentrout, P. B. Ammonia Activation by Co+, Ni+, and Cu+. M+–NH2 Bond Energies and M+NH3 Adduct Lifetimes, J. Phys. Chem. 1991, 95, 3084–3090.
    pub#5 permalink#5
  469. 1990


  470. Fisher, E. R.; Elkind, J. L.; Clemmer, D. E.; Georgiadis, R.; Loh, S. K.; Aristov, N.; Sunderlin, L. S.; Armentrout, P. B. Reactions of fourth-period metal ions (Ca+ – Zn+) with O2: Metal-oxide ion bond energies, J. Chem. Phys. 1990, 93, 2676–2691.
    pub#4 permalink#4
  471. Clemmer, D. E.; Sunderlin, L. S.; Armentrout, P. B. Ammonia Activation by Sc+ and Ti+: Electronic and Translational Energy Dependence, J. Phys. Chem. 1990, 94, 3008–3015.
    pub#3 permalink#3
  472. Clemmer, D. E.; Sunderlin, L. S.; Armentrout, P. B. Ammonia Activation by V+: Electronic and Translational Energy Dependence, J. Phys. Chem. 1990, 94, 208–217.
    pub#2 permalink#2
  473. 1989


  474. Clemmer, D. E.; Armentrout, P. B.; Investigation of Isomeric Intermediates: Co+–NH3 and H–Co+–NH2, J. Am. Chem. Soc. 1989, 111, 8280–8281.
    pub#1 permalink#1



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